Array 1 84300-81295 **** Predicted by CRISPRDetect 2.4 *** >NZ_POJF01000038.1 Streptococcus suis strain 2214 SS_2214_Contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 84299 36 100.0 29 .................................... GATAAAGATACTAAGTATACTGCTGGTAA 84234 36 100.0 30 .................................... AACTGGGAAAAAGGTCGGACTTCATCGAAT 84168 36 100.0 30 .................................... GGTTATTCCAGCGGTGAAGGTGGACACACT 84102 36 100.0 30 .................................... AACAACGCCGAGCGGTATGTTTACAGAACG 84036 36 100.0 30 .................................... ATCTACGTTTTGAGGAAATAACTGATGAAC 83970 36 100.0 30 .................................... ATTAAATAAAAAATAGGATTTAGGGCATTC 83904 36 100.0 30 .................................... AAATGAACGCTACGGAATGCCTAGAAATTC 83838 36 100.0 30 .................................... ATTGTGCCAAAATCGTCAAGCAATTCCCAA 83772 36 100.0 30 .................................... ATCCCAAAACTTAACTACATTATCATCACT 83706 36 100.0 30 .................................... CTTTCTTGTCTGTTTCGTGCTTGTGTATGC 83640 36 100.0 30 .................................... CTAACTATCCTGATGGTACTCGTGTCATCT 83574 36 100.0 30 .................................... TGTTGGCTTTGCGGGTGTGGTCGTTGCCTT 83508 36 100.0 30 .................................... GTCTATTTTATCCAACATGCGCTGTCGCGG 83442 36 100.0 30 .................................... CGAAACTTTTACAGCTACAGCAGGGAATGT 83376 36 100.0 30 .................................... ATCAGATATTCTTCTTCAAAGATTTCGCTC 83310 36 100.0 30 .................................... AGCGTGTGAGGATTTTCCACCTAATACTGT 83244 36 100.0 30 .................................... AAGGTACTGGTTTTCAACTGGTGTAGCGTT 83178 36 100.0 30 .................................... TTCAAAAGATATTGAAACTCTTGAAAAAAT 83112 36 100.0 30 .................................... TCTCCATCCATTTTGCAAAGTACTCAGCAA 83046 36 100.0 30 .................................... ATTAACAGATTGACCTTTCTCATACCATAC 82980 36 100.0 30 .................................... TGTTAAATAGTGCAAAAGCGCAGGGCATTA 82914 36 100.0 30 .................................... TTCACAAAGGAACAATGCTTTGAGACGGCT 82848 36 100.0 30 .................................... CTTGTATCGAGGTGGTAAGCCAGTGGTTTC 82782 36 100.0 30 .................................... ATGCGAGATTTTGGCGAGACTGTCGCCCCT 82716 36 100.0 30 .................................... AGGTGAGTTTGCCAATATTACATTGCCAGA 82650 36 100.0 30 .................................... CACCGAAAGTCTGTGACAATTCAGAAATAA 82584 36 100.0 30 .................................... ATCTATATCTCGAATCTGGTACAGAGGTAT 82518 36 100.0 30 .................................... GTGACCACACTTTGAGAGTTCTTAGTCCGT 82452 36 100.0 30 .................................... CTCGCTTGGTAAACCTATGCTACCTCTAAT 82386 36 100.0 30 .................................... CGTCTATTTATCCGAACACCTTGAACTCAT 82320 36 100.0 30 .................................... ATTGTAACACCATACGGCGTATCTACCAAA 82254 36 100.0 30 .................................... TCCTCTGAAAATTGTCCAATTACATCAGTA 82188 36 100.0 30 .................................... AGTCTATAATCAACTCAGAGAAACCAATCC 82122 36 100.0 30 .................................... TTGGAGAGAAGGGCACTGGCGCAACTCTGG 82056 36 100.0 30 .................................... TGCTAATTTGTAATCAGCTAGCAAGCCATA 81990 36 100.0 30 .................................... CAGTGTGCCTGTTATTCGAACAGAGAGTCC 81924 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 81858 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 81792 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 81726 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 81660 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 81594 36 100.0 30 .................................... TTCTCCTGTTTGATTTTATCAAGTTGTTCT 81528 36 100.0 30 .................................... CAATGACTAATCCTATCGGACTCGTTAAAA 81462 36 100.0 30 .................................... ATAATTTCTGCATTCCAGACATGAGTATTC 81396 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 81330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 46 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTTAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTGGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //