Array 1 64245-62448 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJUI01000015.1 Clostridioides difficile strain CD105KSO8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 64244 29 100.0 36 ............................. CCTTAAAAAGAATAATAGAACACATAATCGCAATTA 64179 29 100.0 36 ............................. CCTGTACAGTGGCCTAGTTTGGCATTTCCTGGTTGG 64114 29 100.0 35 ............................. TGAAATCTCCCCCAAATCGTGCGATAATTAACTCA 64050 29 100.0 36 ............................. TAAGGTCGTTTGACTGGAAGTATAAGTTGTAATGAC 63985 29 100.0 37 ............................. TGTTGTAAGTAAAAATAAAGATGAAATAGTTAAGCTT 63919 29 100.0 37 ............................. AATAAACAATTAGAAGTGGCTCAAAAATTAGACAATC 63853 29 100.0 37 ............................. GAAATTTACATTAAATTTTTGCTTGAAAATCCTAATC 63787 29 100.0 37 ............................. TGTTTATACGAAAGAGTACAGAGGTAAATTCTACGAG 63721 29 100.0 37 ............................. AAAAGTAAAGCTGTTGGCAAAATGACAGCTAAACATA 63655 29 100.0 37 ............................. TTGGTATGATAGTAAAAAAAACTAGTGCGATTACGAA 63589 29 100.0 37 ............................. GGGTATAAGCAATAACATCTTTTTTATTATTTTTAAT 63523 29 100.0 37 ............................. AAGTCTACAACTCTTGACTTTTTCACGAATACTGGGC 63457 29 100.0 37 ............................. CTGGAAGTTGGGGCATAGAGTTTATATTAACAGTACC 63391 29 100.0 37 ............................. ATGACATTAGTTAATTCAGCGTTTGGTGATGTTACTG 63325 29 100.0 37 ............................. GATTTTGACGAGCTATGGAATGATTTAACAGAAGAAC 63259 29 100.0 37 ............................. ATGGGAGTATACTTTTTAAACGATTGTGCTGCTTCAA 63193 29 100.0 36 ............................. ACAGTTGAGCTTACTGATATAATAAAAGTAGAAAGC 63128 29 100.0 36 ............................. AAATATTATATCAAAATATATCAGATACATGGCAAA 63063 29 100.0 36 ............................. CAAGAAGTATAAGGGACATGACTAGTCACTTTAAAA 62998 29 100.0 37 ............................. TATTATGCTTATGTAACTAGCGGAGGCGCCTTATATA 62932 29 100.0 37 ............................. TATAAATTCATGTGTGTCTTTATTTTTTTCTACCCAT 62866 29 100.0 36 ............................. TGGAATTAAAATTATCGAAAGTAGAGATACAGTCAA 62801 29 100.0 36 ............................. ATCTTCCAACTAAATTTATTGTATTCATTTAAATAG 62736 29 100.0 37 ............................. TTATTATTATAAAATATACATAATTGTAAATAATAAA 62670 29 100.0 36 ............................. ATTATATAATCTAAGGGTGAAAGCAAATGAAGCTAG 62605 29 100.0 36 ............................. TAGATTGCTATTAAATTAATCCTCTTAAAAGAACCT 62540 29 100.0 36 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATT 62475 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 28 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TAATTCATTTTTTAATACTCCTTGTAATTTTAATTTGTTTTGTTTTAGTTTTTCTTCTTTTAATAAACTTATTAATTCATCAAGTGCTGATAATGTTCTCTTTGATTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTGAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGAAACATAAGGCATTGAGAGTGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTCAAATTAAAAGGATGTAATAATATTATAAAAAACAATATATAGGAAAAACATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATAAAAGTAAGTGATAATTTGGGAATAGACATACACCTAAAAAATGGAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGACATTAAAAAATAAGGGGAGAAGATAAGAGAAGTCTCATTCAAGACACTCTTACTTAACTTATATGATGCTTCTTATTGCAGATATAGTGAGTTAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 342463-343080 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJUI01000038.1 Clostridioides difficile strain CD105KSO8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 342463 29 100.0 35 ............................. AAAATATAATCGAGAGAATCTTCATTAGTATTAAT 342527 29 100.0 37 ............................. ATTGTTTTGATGTACAGTGATGCATATAGTAATTATA 342593 29 100.0 38 ............................. TTCATAGCCTTTGCGTATTCATCTGTAAATTTTACAGC 342660 29 100.0 37 ............................. TAATGATTTGCTCCTGCCCCCAATAAACTATTATCAT 342726 29 100.0 36 ............................. GCTGGTAGTGCAGGTAGTGAAGTAACTTTGACATTA 342791 29 100.0 37 ............................. AAGTTTAAACAAAGTAAATCAAAATATAAAAATATGA 342857 29 93.1 37 ............T...............T AATTTTAATTCTCTTTGAATACCTTGTGGGTCTGTAT 342923 29 96.6 36 ...............A............. AGTGTAACCATTAAAATTATTGGTATTTCTATCTTA 342988 29 93.1 36 A..............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 343053 28 75.9 0 AA......C...........-.CT....A | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 95.9 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AACCTATTATTGTTTATAGTAGATTTTATTTCAATTAAATGTTTTTCAGCATCTTTTTTCCTTTCATAACTTCCATAACTTTTCTGTTTTATTTTACCGGTTTCTTCCACATACTCCACATATACATGAAATTTTTCATTTCTTTTTCTTATGAAGGCTGATTTAATATTCATAAGAGCACCACCCTTTGAGTTAATTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAGTATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATATAAGGCATCGAGAAGGTCTGATAAGTGTTATCAATTGCACTGCTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGAAAATACTCAACTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAATTATGTGCTATAATAGTTGTAAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGCAAAAAGCCACTCTCGTGCAAAGAGTGACCTAATAGTTGAATTTAAATTTATGTTTAAATCCAAAAAATGATTGAGTTTTAATGAACTCCACTCTACGACTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTATAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACAAAATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 372145-372763 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJUI01000038.1 Clostridioides difficile strain CD105KSO8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 372145 29 100.0 37 ............................. AATTTGACATCAAGTTGTAATTCATTAAAAACTCTAG 372211 29 100.0 35 ............................. TCAGAACTCTCAGCGAAAACGGCAGGAGCATCCGC 372275 29 100.0 37 ............................. AAAACTGAGTAGATTGAATAGTCAAGCGAGATTAACA 372341 29 100.0 37 ............................. TAGTTTTTGACATTACTTTAGCTAATGCTAACTTCTC 372407 29 100.0 37 ............................. TAGCCATATGAAGTGATTTTCCCGAGCCGGGAGTTCC 372473 29 100.0 37 ............................. AGTAGCAATTTTCTTTTTTATTGAAGTTTTTTTCATT 372539 29 100.0 36 ............................. TCAACAGAACACCTACCAATCATTTGGTCAACAAAG 372604 29 100.0 37 ............................. ATTTTAAAGGCTGGTACAGTTGGGCAAGAAAATATTG 372670 29 100.0 37 ............................. TCTTCTTTTAAGATAAACAGTAAAGTAATAGTAAATA 372736 28 79.3 0 G.......C......T....-..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATAGGATTTATATTAAGTACTATAGAAAAGTACAAACTGGTGAAAAATCTGTATTAGATTTATATATTAGTGAAGATGATATTATGACTGAAGAAGAGGTTCAAAAGGGTATAGATGAAGCTAAAAAGAAAAATTATCAGAATTATGTAGACCCATTAGAACAAATAAAGAAACTAAAAGAGTTATTAGACTCAGGTGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGAATTATTAGAATAGATGATATAGTAAGCACTTACAAACATGTAGATGCTCTTAAATTGATAAATTATTCTATTTTAATTTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTCGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGCATTGAGGTTGTGTGATAAGTGTTATCAATTGCATTACTTATAGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATATCAAAGAACACTTGCTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATATGATGATAATGTAAAAAGTAATAAATAGGTAAAATATGTTATAATATTTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAGCTTTTTATTGAGTATAGTAGCTGGTATTGTATCGGCTTTCATATATGATAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCCTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAAGAAACAATGCTTATTAAATTTAATAGGCATTTTTTTATTTTAATATTAAAAAAGGAAGTGAATATATGGTAAGAAAATTGTGGTGTAGTATTTAAAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //