Array 1 1890417-1886455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCYK01000001.1 Chitinophaga parva strain LY-1 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1890416 47 100.0 31 ............................................... TGCTCTCGCTCAATTTGCCGGTGGCAAGTCT 1890338 47 100.0 30 ............................................... TTGAGTGCGATCCTGGTAAACGCATCTTTG 1890261 47 100.0 30 ............................................... TGATACTTTTTGTGAACAGCAAAAATATCG 1890184 47 100.0 30 ............................................... AATTCAACGGGTATATTTTCGTCTACCCAG 1890107 47 100.0 30 ............................................... ACCTACAGGCGCTGACACCACGCCTGTAAG 1890030 47 100.0 30 ............................................... CGTGACAGTGTAGGCTGTTCAATATGGAAT 1889953 47 100.0 30 ............................................... CTTCGGTATCATACAACCACCAATACTCCA 1889876 47 100.0 30 ............................................... GCAGGGAAATGTGGGAAAAGATCGCCGCGA 1889799 47 100.0 30 ............................................... AGTGCCTGTTCCATGTATGCTTTCATCCAT 1889722 47 100.0 29 ............................................... GCCCTGCTGACTACAGCCATGGTCATTAC 1889646 47 100.0 30 ............................................... ATTCGTAGCATGTGAAGGTCACCAGCTTGC 1889569 47 100.0 30 ............................................... GCTATCTCCCAGCGTAATAGTGTCGCCCCC 1889492 47 100.0 30 ............................................... TGGGGACTTGATGATGTCAAACCATAATGC 1889415 47 100.0 30 ............................................... CCGGACTTCGGATTGTTCGCGGCTACTAAT 1889338 47 100.0 30 ............................................... TACTCTTCTATCACTACAACAAAGGTACCG 1889261 47 100.0 30 ............................................... ACCGGTCATGGAGGTCTCTTGTGGCAAAAG 1889184 47 100.0 30 ............................................... TCCTGTAAAACACGGCTGCTTCTCATTCCC 1889107 47 100.0 30 ............................................... ATCACCTCTAAAATATAAAACATGGAAACA 1889030 47 100.0 30 ............................................... ACGAAGCTCCTGCTGTCCGCAGTACGGACG 1888953 47 97.9 30 ..................C............................ AGGATCGTGATGCTAAGGATGCTCAGATTG 1888876 47 100.0 30 ............................................... CCCCCATTTCTGCGGCCCCAAAATGACAAT 1888799 47 100.0 29 ............................................... CCCAGCCGTGCGCCACCATCCAGGCATTT 1888723 47 100.0 31 ............................................... TCTATCCGAATCGTCCTTTTGCCCGCCTCAA 1888645 47 100.0 30 ............................................... AATGCTGGACAACTGGCATATAAAGGCTCT 1888568 47 100.0 30 ............................................... ATCAATGACTATTGTAGCACCTTTCGCTGT 1888491 47 100.0 29 ............................................... GCAGGCTTTGATATGGTGCGGCCGCTGGT 1888415 47 100.0 30 ............................................... CCCCTTGCGTTGTTTGCTTCGATGCGCACA 1888338 47 100.0 30 ............................................... GCCGGAGGAAACAGAGATCACCAACTACCA 1888261 47 97.9 29 ....................................T.......... ACCATCAAGTTCTTGCAGCAATTAGGGGA 1888185 47 97.9 31 .............................................G. CGTACAATGTGAGGTACCGCGCGCACCGCAT 1888107 47 100.0 29 ............................................... GTACTTCGCAAATTGAACTTTCTTTTACA 1888031 47 100.0 30 ............................................... TGCACAATTGATTGCGCCAAATTTGGTAAA 1887954 47 100.0 30 ............................................... TCATTAACAACCAGTGCTACGTCAAACGAT 1887877 47 100.0 30 ............................................... AGTCAACAGGATGTGTATTGTTATCGAGGG 1887800 47 100.0 19 ............................................... TTCCGGGTTTCTTCCGCCG Deletion [1887735] 1887734 47 70.2 30 .AAACTCC.A.AG.TGT.....C........................ GGTATTCACCCTGCCACTATACTGATCTCG TT [1887713] 1887655 47 100.0 30 ............................................... ACCTGCGTGCGTGTGGGCTTTGTTGTTTGA 1887578 47 100.0 30 ............................................... GAAAGAGCCGCGCATTCCTATGCATAAAAA 1887501 47 100.0 30 ............................................... AAAATAAGGCAGTTAACAAAACTGCCGAAT 1887424 47 100.0 29 ............................................... TAGGTTGTGATACGTTGTTGCGCTTTGCG 1887348 47 100.0 30 ............................................... CAGAAAGCATTTTCTTGCTTGGGCAAAGAA 1887271 47 100.0 30 ............................................... CGAGAGGGAGCTGTTGAATGACGCAGCAAC 1887194 47 100.0 30 ............................................... ACGTAGGCCATCACGAGATTGTAGCTACGG 1887117 47 100.0 30 ............................................... CGGTTTGATGGCGTGGGGCCGGATTACATC 1887040 47 100.0 30 ............................................... TAATCTACACAGATCCCTGGTACGGTTCGT 1886963 47 100.0 30 ............................................... TAAGGATTCCAGTGAGCGCCTGGCAATCAA 1886886 47 100.0 30 ............................................... CTATGGATTTGAGTTCACCCGTATCAACCT 1886809 47 100.0 30 ............................................... AAGATTTTGAATGTGAATTCTCGGACTTTG 1886732 47 100.0 30 ............................................... GCAGGTGTTCAACGAGCGCACGGACATGGT 1886655 47 100.0 30 ............................................... CAAGCTGATGGTATAGTTGTGAGAAACTTT 1886578 47 100.0 30 ............................................... TAATTGACGTTGTGTGACATGATTTGAAAA 1886501 47 93.6 0 ....G.C..............A......................... | ========== ====== ====== ====== =============================================== =============================== ================== 52 47 99.2 30 GTTGTCTATTAGCTAAGCTAAGGAATAAATTGAAAGCAAATCACAAC # Left flank : CCAGCTTGGCTAAATGTTTTGAAGGCAAAGCACGCAAGATCCTATATCCAACGCTTTGTTAAAAATTATTCAACATAATGCACTCACGTTTAAATGCTTATCGTGTTATGTGGGTACTTGTTTTCTTTGACCTTCCTACTGACACCAAAGGACAACGGAGAGAATATGGAAAATTCAGGAAAAAGATCCTATCTGACGGGTTTGTTATGTTTCAGTTCAGCATGTATATCCGCCATTGCAACAGCAAGGAAAATGCTGACGTGCATGTAAAACGGGTAAAGTCAATATTACCAGCGGAAGGGCATATTGGCATAATGTGCGTGACAGACAAGCAATTTGGGATGATGGAAATATTCCAGGGGAAGTTTACGGTAATGCCACCAAGTACCGTACAACAACTGGAATTGTTCTGATAGAAAAGGAAAAATGGGCTTGCGGCCCATTTTTTTGTTTACAAAAACAACATAACTTGCTAATAAATAATTATTTATAACGATTAT # Right flank : CGCAGATGTAACGGCAATCATGTTAAGCATGCTGTCTATTAGCTAAGCTAAGGAATAAGCAAATCACAAACAAACCCAAATCACAAACAAACCCACTCCCCCACCACATTTTTTCTCCGTACCTTTCCCTCCTCATGCCGCCCATCCACCGCACCCGCCTGGCCCCCACGCCCAGCGGCTATCTCCATATCGGTAACGCGCTCTCCTTTGCGCTCACCGCCGCCCTTGCGCAGCAACACCGCGCACAAACCCTCCTGCGCATTGACGACATGGACCGCGATCGCATACAACCTGCCTACATCCAGGACATCTTCGACACGCTCTCCTTCCTAAACATCCCCTGGACAGAAGGCCCCAAAAACATCACCCAATACGAACAACAATACTCCCAGCACCATCGCTTATCCTTATACGAAAACGCGCTACAGCAACTGGCCCGTCAGGGCAAGGTTTACGCCTGCACCTGCTCCCGTGCACAGATCCTGCAGCACAACGCGGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCTATTAGCTAAGCTAAGGAATAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.60,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //