Array 1 35574-29972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDXA010000008.1 Vibrio cholerae strain 4772STDY6941189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35573 28 100.0 32 ............................ AAACGCTGATACCACTCGCGCAACCAGTCGGT 35513 28 100.0 32 ............................ TTGCGAACATGGAAGTCTTGAAGGCTTTCCAT 35453 28 100.0 32 ............................ TATGTGGGTATCTCGTTAAACGAAAACTGTCT 35393 28 100.0 32 ............................ TCCCTGCCGATTGAATCAGGAAATAATTCAAT 35333 28 100.0 32 ............................ AGCAAGTCAAGGGGCTACGCCAGCGGCAACAA 35273 28 100.0 32 ............................ TTAACGATGAGCGGTCAAGTTACATCCGAATG 35213 28 100.0 32 ............................ ATGACCAAATACAGCAAAGAAGACTTCGCACT 35153 28 100.0 32 ............................ TACCACTAAGTATGATGTTATCTACATGGATC 35093 28 100.0 32 ............................ TAATCTCTCGAACAGTGGGGGCTTACGCCCCC 35033 28 100.0 32 ............................ TTTCTCTTCCTTTTTGGCATATGCATAATCTT 34973 28 100.0 32 ............................ GCTAGGGGCGTTGTCCAGTCGCTTACTGAGGT 34913 28 100.0 32 ............................ GCTACCAACAGTCGCCTATTTAACTGATTAAA 34853 28 100.0 33 ............................ CAAACAAAAAAGATAAGTCTTTGGCAATCTCAA 34792 28 100.0 32 ............................ ATGCTATCAATGAAAATTTAGTCACTGTGAAG 34732 28 100.0 32 ............................ TTACGGTTATTTAGTGGGAATCGCCCTTTCTA 34672 28 100.0 32 ............................ TTCTGCCGTTCCAACATCTGCCGCCGTTAACG 34612 28 100.0 32 ............................ TATGCAGGTAACGGACTCTTCAATGCAGATGA 34552 28 100.0 32 ............................ TTGCGCTTATTCAGTTCACGGCGAAGAATCAC 34492 28 100.0 32 ............................ CACATCCTGCACGTTAATATTTTTGATTTACC 34432 28 100.0 32 ............................ AGACATAAAAAACATGGTCGATATACACGACT 34372 28 100.0 32 ............................ CGATGGGAATAGAGCCCCCATTTTCGGATAAA 34312 28 100.0 32 ............................ ATTTAGGGGCTTTTCTTTTTGAGTTATTCCTG 34252 28 100.0 32 ............................ ATCCAAAAGTATTGAGTATTTGGTCGCTTTCT 34192 28 100.0 32 ............................ TGCAAAAGTTAATTCTAGTGAAACAGTATAAC 34132 28 100.0 32 ............................ TTACGTTATCTGCCTTAATGATGTATAATTTA 34072 28 100.0 32 ............................ ATCCGACAAAAGGCTGGTAACCTTGCCAACAC 34012 28 100.0 32 ............................ AATACTCTGAGATCTCACCGTAAACCAAAAGC 33952 28 100.0 32 ............................ TGCCAATCGGCATCGAGCAGGGATTTATTATT 33892 28 100.0 32 ............................ TCATCAATAAAGCCAAGCTCTAACGCCTCTGA 33832 28 100.0 32 ............................ GTACTCCGTTCGCCGTATCAATAGCTTTAATC 33772 28 100.0 32 ............................ TATTCGACCACATCACCGAAATGGTCAACAAC 33712 28 100.0 32 ............................ TTTAATCTTTAGTTGCCTGGCAAACTCTTTTA 33652 28 100.0 33 ............................ GTGAAGGCATTGTAACCGCACTGAACTTTGTCG 33591 28 100.0 32 ............................ GCAAGAAGCTTGGGCGCAACAACATCATGGTC 33531 28 100.0 32 ............................ CATTACAGGCCGCATTTGCACTAAATACCGAG 33471 28 100.0 32 ............................ AAGCGCGCTCTGTGTGCATTGTCGGAATGTGT 33411 28 100.0 32 ............................ ATTTGCGCGCCGAGTTTAAACGATAGTTCATA 33351 28 100.0 32 ............................ GTCCGTTACTCAGTGCCGTATGATCGCGAATT 33291 28 100.0 32 ............................ TTTGCGCCGCAGTATTTAGCTAATGACTTGAT 33231 28 100.0 32 ............................ ATCTAGGAATCGAACCTTGTACCCATCTGGGA 33171 28 100.0 32 ............................ ATGTTTGTGACTTGGTGAAGATGACCGAAAAA 33111 28 100.0 32 ............................ AAGTGAAAGCATCCACAGCGGATGCAGTTCGC 33051 28 100.0 32 ............................ TTAAAAAAATGAGTGGCGATTGCCACTCAAAT 32991 28 100.0 32 ............................ CGGTTGAGAAAGCCGGACACTTAGAGACGATC 32931 28 100.0 32 ............................ GGCTTAATGTAACGACACTCCCAAGCTTTGAA 32871 28 100.0 33 ............................ CGCAAGGGGGAGGGTGGGTCAAAACCTCCCAGC 32810 28 100.0 33 ............................ CGCCAGAAAGGTTGGTGATAAGTCACTATGAAT 32749 28 100.0 32 ............................ ATCTTGGAGATGATGGAAGCGGGAACGAGCTT 32689 28 100.0 32 ............................ GCGCAAAGTGGGAATTCATCCTTATCTCTCAG 32629 28 100.0 32 ............................ AAGCCACCGCACAGGCGGAATGGCTTTCGAGT 32569 28 100.0 33 ............................ CGCAAGGGGGAGGGTGGGTCAAAACCTCCCAGC 32508 28 100.0 32 ............................ TGATGCGTTATGAACAAACGCGCTATCATCAA 32448 28 100.0 32 ............................ TTGCTCATCGCCGAACTCCGCGTTAAAGCGTT 32388 28 100.0 32 ............................ ACAGACAATGGCGATTCTTGAAATGCTAAAGC 32328 28 100.0 32 ............................ CAATAGCGATACCACCGGAAGCGTGGGCGATG 32268 28 100.0 32 ............................ TGAAAGGAATTAGCAGAAGCTCAGCTGGCAGA 32208 28 100.0 32 ............................ TTGTGCCACAGTAACATCATCGAGTGTAATTG 32148 28 100.0 32 ............................ GAATTCAGAAGACGAACCGCTTTACCGTTGGT 32088 28 100.0 32 ............................ AAAAGAGTGCCAGCATAAGGGCGTATCTCCTC 32028 28 100.0 32 ............................ GCAATCGGGTACACCAGCCCGAAAAATACAAA 31968 28 100.0 32 ............................ GTTATCCAGTAAAACTAGCTTGCTCTCAAACG 31908 28 100.0 32 ............................ TTTTTGGATGCGATGCCCTTTTCCATCGATGT 31848 28 100.0 32 ............................ TTTGATGAGGTGCGGCGCCATGGCGTTGTCTT 31788 28 100.0 32 ............................ AGCAACCATAATAATGATAGCGGTCGCAGTCA 31728 28 96.4 32 ...........T................ ATTAAAAATGGCGACCTAAGTCGCCTGTTAGT 31668 28 96.4 32 ...........T................ AAACACGGCATCAAGCCAGCTTGTTTGGGATC 31608 28 96.4 32 ...........T................ ACAGAGCGTTACCACCTGCGATCTCATTAAAT 31548 28 96.4 32 ...........T................ CTAGGTAGTGACGCTGGCCGCTACGATTGGAC 31488 28 96.4 32 ...........T................ TGGTACCAGATGGCCCCAAGGGGGCAGCCGTA 31428 28 96.4 32 ...........T................ AATCGGTGAATGTATCGAAAACGTAATGCATC 31368 28 96.4 32 ...........T................ GCCGGATAAATCAGATGCCTTAGCCTTAACTT 31308 28 96.4 32 ...........T................ GGCATCGAGCTAAAGAAAACCGCCTAACCTAT 31248 28 96.4 32 ...........T................ AGCAAGAAGCAACAGAAAAACAAATAAAATGA 31188 28 96.4 33 ...........T................ TGAAGAGAATGAAAACGGCATTTATGCTTGTGT 31127 28 96.4 32 ...........T................ ATTCAAACAAGCAGCGCTCGGCCTCTTGAATG 31067 28 96.4 32 ...........T................ TAGTAAGAACGTTAATACAAACGACATAACGC 31007 28 100.0 32 ............................ TTTACACTTTCCGTTGTACTCAGTTTCATCGT 30947 28 100.0 32 ............................ ACTCGGGCAAATGTTACATCTTGCTTCAATGA 30887 28 96.4 32 ...........T................ GCAGGAATGAGCGGCACCACTGGCAAGCTGCC 30827 28 100.0 32 ............................ ACTGAAACCGGATTAAAAATCATTGACGACAT 30767 28 100.0 32 ............................ GATTACGGATGAAGTCCGCGGTGATATCGGTT 30707 28 96.4 32 ...........T................ GGTATCGCGTCAGATGATCCGGAAGCAATTGA 30647 28 96.4 32 ...........T................ ATTAACTGTTATTTTTAAATTTATGAATGAAT 30587 28 96.4 32 ...........T................ ACCATTCACCGCTGCAGTCGTTTGGCACGAGA 30527 28 96.4 32 ...........T................ TGCCGGATCCCCGAAAAACTCCACATCACAGC 30467 28 100.0 32 ............................ AATCGGAATGGAAGTGGCGTTTGATACGCCGC 30407 28 100.0 32 ............................ CGACTATCTGAAAGATGCCCCTGAACCGCTGC 30347 28 100.0 32 ............................ ACGCTCGACTTTGCTTACAACGTTGGCGTCGG 30287 28 100.0 32 ............................ ACAAGACCTGGACAAGTCCGAGCTGAGCCAGA 30227 28 96.4 32 .........A.................. AAATCAGGAAAATGAGCAAAATCGACCAGAAA 30167 28 100.0 20 ............................ AAGCAGCATACCGAGCAGCA Deletion [30120] 30119 28 96.4 32 ...........T................ TCGGTGATAATGGTCGCGCTGATTGAATCGCC 30059 28 96.4 32 ...........T................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 29999 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAGGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //