Array 1 68355-68502 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJT01000016.1 Escherichia coli strain MOD1-EC6165 MOD1-EC6165_16_length_127313_cov_26.754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68355 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 68415 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 68475 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTTGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62451-63516 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJT01000015.1 Escherichia coli strain MOD1-EC6165 MOD1-EC6165_15_length_129129_cov_26.6733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62451 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 62512 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 62573 29 100.0 32 ............................. TCTGCCAGTTCATTCAGGGCTATCGCCAGCTC 62634 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 62695 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 62756 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 62817 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 62878 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 62939 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 63000 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 63061 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 63122 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 63183 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 63244 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 63305 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 63366 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 63427 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 63488 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89216-90893 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJT01000015.1 Escherichia coli strain MOD1-EC6165 MOD1-EC6165_15_length_129129_cov_26.6733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89216 29 100.0 32 ............................. GTTCCACGGCATCAGTTACCTCCCCAGCCGTT 89277 29 100.0 33 ............................. TCCTCGAGTTTATTTGCTGCTGCGACCGCCTGC 89339 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 89400 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 89461 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 89522 29 100.0 32 ............................. GTGGTGTCTGGTCTGTCGTTCACTCCCGCAGT 89583 29 96.6 32 ..........................T.. GTTATCCCACGGCTTACCAGGTACTTTTCTCC 89644 29 100.0 32 ............................. GAATCCGCATAAGGAAATATAAATGGAACGAT 89705 29 100.0 32 ............................. AATTAATTGCCTCGCCTTTTCAGTCGTCGCCG 89766 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 89827 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 89888 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 89949 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 90010 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 90071 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGCGGGCT 90132 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 90193 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 90254 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 90315 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 90377 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 90438 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 90499 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 90560 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 90621 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 90682 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 90743 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 90804 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 90865 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //