Array 1 39071-38188 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPW01000024.1 Escherichia coli strain MOD1-EC5006 MOD1-EC5006_24_length_80746_cov_70.6703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39070 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39009 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 38948 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 38887 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 38826 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 38765 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 38704 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38643 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38582 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38521 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38460 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38399 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38338 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38277 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38216 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65817-64812 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPW01000024.1 Escherichia coli strain MOD1-EC5006 MOD1-EC5006_24_length_80746_cov_70.6703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65816 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 65755 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 65694 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 65633 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 65572 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 65511 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 65450 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65389 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65328 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65267 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65206 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65145 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65084 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65023 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 64962 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 64901 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 64840 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //