Array 1 46202-45044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWOZ01000012.1 Neisseria meningitidis strain Nm88001 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46201 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 46135 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 46069 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 46003 36 100.0 30 .................................... ACAATGTTTCGGCGCAACACATCAGCAGGG 45937 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 45871 36 100.0 30 .................................... GTGTGTTCGGCAACTCTGACCGCATGACGA 45805 36 100.0 30 .................................... GACGTCAAATCGCGTTACGCCATGGCGCAG 45739 36 100.0 30 .................................... AATCGCCTCGAGCCATACGGAATCAAGCTC 45673 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 45607 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 45541 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 45475 36 100.0 30 .................................... GTTCCGCAATCTGCGTAACTTGATTGCACA 45409 36 100.0 30 .................................... CGCCAGCAGTTGCTACTTCAGCAGGCAAGT 45343 36 100.0 30 .................................... CGCCCTAGTTAGTTATGCAATCGGTAGGTC 45277 36 100.0 30 .................................... GCTTGTTTTTTTGCTCCGCATTTTTTCCGA 45211 36 100.0 30 .................................... TAGCTGTAATTACCATTGTCAGCAAAAGGG 45145 36 100.0 30 .................................... AGCAAGTGCAAAGTGTTGCACATAAAAGGG 45079 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //