Array 1 982700-984009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085699.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 982700 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 982761 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 982822 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 982883 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 982944 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 983005 29 100.0 32 ............................. ATGCCGGAACGCTGATGGCGTTTGACATGAGC 983066 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 983127 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 983188 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 983249 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 983310 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 983371 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 983432 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 983494 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 983555 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 983616 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 983677 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 983738 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 983799 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 983860 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 983921 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 983982 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1000141-1002105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085699.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1000141 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1000202 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1000263 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1000324 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1000385 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1000446 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1000507 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1000569 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1000630 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1000691 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1000752 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1000813 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1000874 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1000935 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1000996 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1001057 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1001118 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1001179 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1001240 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1001301 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1001362 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1001424 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1001485 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1001527] 1001527 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1001588 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1001649 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1001710 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1001771 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1001832 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1001893 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1001954 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1002015 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1002076 29 96.6 0 A............................ | A [1002102] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //