Array 1 57-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRLA01000014.1 Escherichia coli strain 503698 ctg7180000007213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 118 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 179 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 240 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 301 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 362 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 423 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 484 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 546 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 607 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 668 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 729 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 790 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGCGACAAAATTCTCAAAACTCGATCAGGAAAATG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63490-62789 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRLA01000150.1 Escherichia coli strain 503698 ctg7180000007396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63489 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63428 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63367 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63306 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63245 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63184 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 63123 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 63062 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 63001 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 62939 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62878 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62817 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80667-78991 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRLA01000150.1 Escherichia coli strain 503698 ctg7180000007396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80666 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80605 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 80544 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80483 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 80422 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80361 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 80300 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 80239 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 80178 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 80117 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 80056 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 79995 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 79934 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79873 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 79812 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 79751 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79690 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79629 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 79568 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79507 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79446 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79385 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79324 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79263 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 79202 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 79141 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 79080 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79019 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //