Array 1 892-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000001.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 891 30 100.0 39 .............................. TATCGATTTCCTCTTGATAAGTTTCCGTATCAACTGCAA 822 30 100.0 37 .............................. CATAAGGATATGATGTATCGACCGGTATTTTTAGGGT 755 30 100.0 38 .............................. TTGTTTAGGTCTACATCTTGCCTAACTCGATGATATAT 687 30 100.0 38 .............................. CGCTTTTGAACAATTAAGGCATTTTTGAGAGCCACTCC 619 30 100.0 37 .............................. TAATACACTTTTACTACATAGGGTAGGAAAAACCTTA 552 30 100.0 38 .............................. GCAATAATCACAAAGTCCTTATCAACAATAATTGGTAC 484 30 100.0 38 .............................. ATTCCCTATTGCACTAATAAGTCTTGACATGTGTTTTA 416 30 100.0 36 .............................. TTACACTTGTCACTAAGAACCACATTGCTGTAGGGA 350 30 100.0 37 .............................. CTTATTGTTACGATTGTTTCAAGTTGTATATGCTTAT 283 30 100.0 37 .............................. TCAATTGCGTCATGACTTCTTTTCAAAATACCTTTTC 216 30 100.0 38 .............................. CGCACCCACGATTGCTTCTATTGCCTCATCATTGCTCG 148 30 100.0 36 .............................. ATCTTCCACCGTTCTTCTTTCGTTTCCAAACATCAT 82 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 38 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : AACAAGCTTTCTTTTATGTTTTTTGGAATGTTATCACGTTAGAATAGTCCTATTTTTAGTTCACTCTTGTATTGAGGAATTAAATTTAAAATCATTCTATAAGAGGGTTCTAGAAGTCTTTAGTAACTATAAGTTACTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAACAGGGTCTTTTTAGGGCTTCTCTGATATCCTCTCCTCGTGGAAATTTAACCTTTTTTAGTTCAAAGTGTTTTTATTAGCTTATTTTTGATTTTGGCTTTTATTTTGTCTCTGGAAGTCTCATGGACAAGATTGGACATGGAGGAAAAAGAGTAAGTTCAGGCGAGTGAGTGCTTTGAAGTCTTCTCTAGTGGCTTGGATTCGAGCTTTTTGAGGGGATTTTTATTGACCCTTTATGGAAAGGCTTATAAGATTTGGGCTTTCTAATTACTTTGTAGGGAGTTTAGAGGAAAATTCGCCCCT # Right flank : GTGATAGGGGAGGTTATCGCAGTAGAGCAAGTACACTTTGTTCCAATAAGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 45826-44102 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000081.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 45825 30 100.0 37 .............................. TTGGTGACGGTAAATCCCAATGCGCCCTCCAATACCA 45758 30 100.0 37 .............................. TTTGTCCGATTACAGTTATAACTGTTTCATCTTGCCC 45691 30 100.0 37 .............................. AAAACATCTTTAATAAGGGCAATATCCAAGTATTATA 45624 30 100.0 37 .............................. GAGATACAATACTTTGTGATCAAAGGTAATCACGATA 45557 30 100.0 37 .............................. CTAATTATTTTAACTGCAGCTGCAGCAATCATCAAAG 45490 30 100.0 38 .............................. AGAGTTGCAGTAGCCCTCTTCTGATAGTCGTGGCCCGC 45422 30 100.0 38 .............................. TCTTGTAATTCGAACGTCCAACCAGTCAAAATTTCTGA 45354 30 100.0 38 .............................. CCGTTACCATACTTTCACACGACACCCACATATCATAT 45286 30 100.0 37 .............................. GTTAGAGCACGATGTAATAAATTTTGAAATAGTTAAT 45219 30 100.0 37 .............................. CTTTGCAACTTCTATTGCCCCAAAAACCACTACAAAA 45152 30 100.0 38 .............................. GTTTTTGTGCGAACCGTGATGGGGAACTAACGTTGCCA 45084 30 100.0 37 .............................. GCTTTTTTCAAATCCCGATTGCCATAATCAACGCCTT 45017 30 100.0 39 .............................. CTGGCAATCAATTCTTTTTTGACACGTTCAAGAATTTCA 44948 30 100.0 37 .............................. TAACGTAGAAAAAGCGACCCAGTCCGAGCTTAACGCT 44881 30 100.0 38 .............................. TTTTCCCATTTTTCCCATCCCCTTCTGTTTGTTTCCAC 44813 30 100.0 38 .............................. AGTTTTGGCTCAATTTGCGGCATGGGGTAGCGTCGCGA 44745 30 100.0 38 .............................. AGAGAAATACACGGGCGTTAAAGCTACTAAATTGACAA 44677 30 100.0 35 .............................. CTTGCTATTGTTATATCGGCGGCGAAATCCTTGTA 44612 30 100.0 38 .............................. AAGTTGTGCTTATTGTCGCTATTTCTTTAACCCCGTCT 44544 30 100.0 37 .............................. CTACGAGGACTTCTTTGCGGCGTTCGGCTACAGAATT 44477 30 100.0 36 .............................. AATCAAATACGGCCGGGGAACAATTGAAAAACCTAG 44411 30 100.0 37 .............................. GGCGTGGATCAGACACACATCACAAATGAAGAGCTAA 44344 30 100.0 38 .............................. AGCTTGTACAGAATTACAAGGAGTTTTGCGAATTGTTT 44276 30 100.0 48 .............................. TAGAAGATGAAGATTGGAGACGCCCAAGCGTACCATACAACATAGAAC 44198 30 100.0 37 .............................. CAGGTACGCACTATGAAGACATCATCAAAAGAGTATC 44131 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================ ================== 26 30 100.0 38 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : AAAACTCAAAATGCTTATCGAATAGTCCTGTATCACGTTTAGCTTTTCCTTTTTTTGGGTTTTCTTTCTTCTGGTGAGCCAGTTTTGATGTTAAGGCTCTAAGGTTGCTCTGGAACTCTTTAGTAACTGAAAGTTATTATCAAACAAAGAGTTACAAAATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAACTGGGGCTTATCAGGACTTCTTTGATATTCTCTCCTCGTGGAAATTTAACCTTTTTGAATTTAATGCTTTTTTGTGGTTTTATTTTTGATTTTAGCTTTTGTTTTGTCTCTGGAAGTCTTATGAACATCTTCGTGCATTGAAAGAAAAAAGACAGTACAGGTGACTGAAAACCCAAAACTCCTTTTCAATGCCTTGAATTCTAGCTTTTTGAGGGGAGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTCTCTAATTACCTTGTAGGGAGTTTAGAGGAAAATTCGCCCCT # Right flank : ACGCTTCCATTTTAAATAACTCCTCATTGCCATCTTTCGTTCCAATAAGACTTTAAAAAGCTTTTTTGCTCCAATCTTCTGCTGCGCACCTTGAATGTTTGTCACATAAATTGGGAAAATTTTCTTGTCAATACCCAATATATACGAAAAATATTCCGTAAAATTTATATTCTATCGATGAATATTCATAGTTGAGGTAGTCAAAATGTACGAGCTTATGAACTTGTCTACTGGGGAAATTATTAGGACGGGTGAAAATTTAGAGGAGCTACTTCAAGACTTGCCAGAAGGGTTTTATGAGATAAAAGAACATGGAGAATTTGTGAGGTTTTATAGTACAACTAAACCCGAGCACCAGTGCTGGATTTGAGACTTTTTTTAATTTTTGAAAAATAACAAAAACACAAAACTAAAGAACCTTTCTCAGAATTTCCCTCAGATCCTTTAGAAACTCCTCAAGGTGCTCTCTCTTTACGTGGGGCATCATAACGATTCTTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 3-2081 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000036.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 3 30 100.0 38 .............................. TACAACGAGACCATCACCTTGAACGTGAGCGCAACTAA 71 30 100.0 38 .............................. TCGGTTATATTAAAAGCTGTGCTAAAGTGTCTTTCGTA 139 30 100.0 37 .............................. GAGCTTGAACTCATCGATAATTGTTGCTGAACTCTGG 206 30 100.0 37 .............................. GATTTTATAGGAATACGCCCGTATTTGACGATAAAGG 273 30 100.0 41 .............................. GAAGCAATAGCTCCAACTTGGTATCCCTCATATTCGACTAT 344 30 100.0 36 .............................. TAAACTCGGCGAACACCCTATCCGTATCTCCCCTAA 410 30 100.0 39 .............................. TAAATACAAGCAGTACAGAAACAAACAGCATTAATGTAC 479 30 100.0 38 .............................. CAAGTAGATTTCGTACTGGTAACTGTCCCTTAGCGGGA 547 30 100.0 39 .............................. AAAGTTTTTGATTTTGTTGAAACTCAGGATGGCTGGAAG 616 30 100.0 37 .............................. AATATCAAAGTTTGTCCCTGCTATGTTTAACCTCCCA 683 30 100.0 37 .............................. GTAGTCGAAAGTGTACGATATCGGGACGAAACCACCT 750 30 100.0 40 .............................. AATATTGCCCGTCTGCACGTGCGAATGTCGCTTTCAGCGT 820 30 100.0 37 .............................. AAAATTGAATAGGTAAATAATTGTTTAAGACTTTTGA 887 30 100.0 38 .............................. CTCTTTGACTCCGTTACTCCGGGTGGTACATTAATGCT 955 30 100.0 39 .............................. ATCTGGGAGTTTGTCACTGACAAGATAAGCCCAGAACAA 1024 30 100.0 38 .............................. TCAATTTCATGCTCAAAAGATGATATAACAATTGAAGC 1092 30 100.0 37 .............................. TTGTTTGTATTTTACAACTCCAGACTTTACCCATGCT 1159 30 100.0 39 .............................. ACCATTATATCTACTGTTCCCGTGTCCCTAAACTTTGTC 1228 30 100.0 38 .............................. ATGAAGGGTAAGACACTACATCTTAATAACGCTTTCGC 1296 30 100.0 46 .............................. TTATCCAAGGGAACGGGAGCGCAAACATAAGGATGTATTACGGCAA 1372 30 100.0 38 .............................. ATTATTATGGTGGGCAAATTGTCAAAACTCTTGAAATT 1440 30 100.0 34 .............................. AGGGAGTTCTTGAAGAGAGTAAGCGAGGCTCCCG 1504 30 100.0 37 .............................. CCGACTATGGCTGTAGAATAGTCACCTTCCTTAGCTG 1571 30 100.0 37 .............................. AGTGTTCCGGCGACTTGGTCAGCGAGTTGTTCTGGGC 1638 30 100.0 38 .............................. CTCAGCAACATGTAGAGTACTCCAACGCCTATTAGAAC 1706 30 100.0 37 .............................. AGCACAGACTGGCATTATGTTCTTAAGGCGTCAGGAT 1773 30 100.0 40 .............................. GGAGTTGGAACAATAGCCGGTGCGGTTATCGGTGGAGTAA 1843 30 100.0 45 .............................. CTTAAGAACCGCAAAACGACCATTTACCTCTTGGACAGTCGCCGG 1918 30 100.0 37 .............................. TCTTGAACTTCAAAAGCAAACTTCTTAACATCGTCTA 1985 30 100.0 37 .............................. GGAGGATCACGGTATAAGGATACCTGGAAACCTTCCA 2052 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 31 30 100.0 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : AGG # Right flank : GAGCCTTAGTTGGAGTAGCAAAGCTAAGTTAAGATCTCGTCAAGTCTATCTTCTTCAATTGCCTGCCTTATCTCTCTGGCAATTCTCCTTCCAGTGCTCATTGGCTCGTTGTATCTGAGCCATGTGTAAGGGGAGCCGTTTATGAAGGGATTCGTCCCGGCAACGATTCTCGCTGAGATTTCAAACACCACGAATTCCATGTCCTCTGTGATGACTCCCTCAAGGCAGAAAGGCCCCCAAAGTCCTCCCATAAGTTTTTCCGCAGCTTTTACTGCTCTTTCTCCAGCCTCGATTATATCCATGAGCAGGCTTTCTCTGAGCACTATTGGTATGTTTCCCACAACTGTGTAGCTCGTCTCCACCCCAATTTCAAACTGTTGCTCTGCACTTATCCTTCCTATTGCATCTGCATTGCTTTCGTATCTCTTATCTATGCTCATAAGCTCAAGCTCTTTGTTGAGCTTCGAGTAGAAGAAGTGTGGGTAAACGGGAACACCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 42168-43618 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000106.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 42168 30 100.0 36 .............................. GATTTTCTCCTTCCTTCTGTAAAGGTCTTCAAGAAG 42234 30 100.0 37 .............................. TCAATTGCTTCATAAATCTCTTCTTTAACACCACTTG 42301 30 100.0 37 .............................. TACTTCTATGACGACATCATCTAGATCTATCGTATAC 42368 30 100.0 38 .............................. AAAACGCCTTAAGCCTTCCTTTGCCCTTAACAAGCATG 42436 30 100.0 37 .............................. GACGTTTTCAAGGCTAATTTTGAAATTTTAGACATGG 42503 30 100.0 37 .............................. AACTTTTACGCCCAGACCTTAATTTAACTCCTTTGGC 42570 30 100.0 37 .............................. GAAAGGCCCTCTGCCCCTTCTTACCTTGCCCTTCTCG 42637 30 100.0 42 .............................. CCAATCGCATGGTCTCTGTTTATCATACATTTAATCTCATAC 42709 30 100.0 37 .............................. TTTTCTCTGTTATTGTTGCCCTAACTCCTTTGCAAAA 42776 30 100.0 39 .............................. TCAATCAACAACCTGACTTCATGACTATCCTTTATCACA 42845 30 100.0 38 .............................. TAACTATTGTTGCTATCAACTATTGCTATTATTGCTAT 42913 30 100.0 36 .............................. AAGTAGATGTAAGCCCCAACTCTGTTCCTTTCGTAA 42979 30 100.0 36 .............................. TACATCTTCCAGCACTATGTCTAAAAACTCAATGCT 43045 30 100.0 38 .............................. TAAAGTACATTGACCTAGAGCTTTTAAGCATGCTAGAA 43113 30 100.0 36 .............................. CGTTCGGCTATACGGTTAAAGATTTAGCAAATATAA 43179 30 100.0 37 .............................. TCCCTTAATCTAAAATTATTCGGGCTTATGAAGGCTT 43246 30 100.0 37 .............................. AATTCTTACATACACCATTTTTGCTACCTCCTGGAGA 43313 30 100.0 40 .............................. AGCTCTTAAGTTGTCCAGTCCTTTCTTTCCCGTATCCTTA 43383 30 100.0 40 .............................. ACTTTCTCCCTCCCCTCAGGCTTTTCAACTTTTCAATAAA 43453 30 100.0 39 .............................. TAGCCCTAGCCTCTGCTAGGTCTTTCAAAAGCTGCTTAT 43522 30 100.0 37 .............................. AACGAGCACGATTACGTATTCCTCCCCGTTCTTTTCC 43589 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 100.0 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TATAAGACAGAATGATCTTCGAATATCTTTCTATCATGATGCAAACGGATATTTTTAAATTTTTCAACTTTTTCTGTTCGCATTTTGATGTTGAGGCTCTAAAAACAGTCTGGAAGTCTTTAGTAACTGAAAGTTACTATCAGACAAAGAGTCACAAAATTTTGAGGTTTTTGTAACGAAATTTTTTCGAAATTTTGAACTGGGGCTTATCAGGACTTCTTTGATATTCTCTCCTCGTGGAAATTTAACCTTTTTGAATTTAAAGATGTTTTATGGACTTGTTTTTGGTTTAAGTTTCTGTCTTCTCTCTGGAAGTCTTATGAACAAGATTGGACATGGACAAATTTGAAGGTTTTCGTTTGCAAAATAAGCCCAAACTCCTAGTTGATCACTGGAATTGAAGGCTTCAAAATGCTGTTTTATTGACCCTTTGTGGAAAGGCTTATAAGATTCAAATCCTCTAATTACTTTGTAAGGGATTTAAAGGAAAATCCGCCCCT # Right flank : GGTTGAAGTTGCGGAGGAGCTTGAGAGGTTTGATATCAAGTTCCAATAAATCCTTATCTCTCTTTAATGAACAACACTTTTAAATCCTCATCAAGTACTCCTTTTGATGATAGCATTAGGGATTGAGGGAACAGCACATACACTTGGTATAGGGATTGTGACGGAAGATAAAGTTCTCGCCAACGTATTTGACACTCTCACAACCGAAAAAGGTGGCATACACCCAAAGGAAGCCGCTGAACACCATGCAAAGCTCTTAAAGCCCCTTTTGAAAAAAGCTCTTAAAGAGGCTAAAATCAGCATAGAAGATGTGGATGTAATTGCTTTCTCCCAAGGGCCTGGATTGGGGCCGGCTTTGAGAGTTGTGGCAACTGCCGCAAGGGCTTTAGCTATAAGATACAAAAAACCCATTGTTGGAGTCAATCACTGCATCGCCCACGTGGAAATTACAAAGATGTTTGGAGTAAAAGACCCGGTCGGTCTTTACGTAAGCGGGGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 233-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000167.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 232 30 100.0 38 .............................. TTTTTTTAACCTCCTTATTTTAGCAAGGCTTATTTAAT 164 30 100.0 37 .............................. CTTATTTGTGCCTTATAGAGTGTTACTACGATAAGGA 97 30 100.0 37 .............................. AAAATAGTAATGCCCCTTATTGCAAAAGAAGTTGCTG 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : TTTAGAAGAATTGAAAGAAAATAGTAATGCCCCTTATTGCAAAAGAAGTTGCT # Right flank : G # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 131-1666 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000011.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 131 30 100.0 34 .............................. AAAGCTGGGGAGAGTGATTAAATGAAAATGAAAG 195 30 100.0 37 .............................. AGAATATTCCATCTCTAGCGCACGGCTATAAATTTCC 262 30 100.0 38 .............................. CTAGCTTCGTCAATGATATAAAGCAAATAGGGGGCATG 330 30 100.0 38 .............................. AAACATTTTCCACGAAAAGGCTACCCTAGTGGGCATGA 398 30 100.0 37 .............................. ATATTCTAAATTTATCGAATTCTTAGAAGACTACCTA 465 30 100.0 37 .............................. GCCGACGACGTGGACGGCTAGAGAAGCGTTAAATTTA 532 30 100.0 36 .............................. TTCTTTAACAATAGTTCGACGTCCTCTTCGGTCGCG 598 30 100.0 47 .............................. GAATTCCCCCGCCCCGGATTTTTCCCCGCGCTAAAGCCGCTATTAGC 675 30 100.0 37 .............................. AGTTACTACTACAGTAACGAACGACACCGCTAGGTTT 742 30 100.0 37 .............................. TAGGTCTTTTGAAATTTGAGGTATACCTTTACCGTTT 809 30 100.0 40 .............................. CGGTCTAAAGGGACGCGTTCACCGTCTAAGTCCGCACAAA 879 30 100.0 43 .............................. TAGGGTCTTAATGTTTCAACGAGAATAATGAGGTCAATCGAAG 952 30 100.0 41 .............................. TCAACCAGCTTGAGTATCAGGGCGATTGTAATTGCGAGAGC 1023 30 100.0 38 .............................. ATGTCTCTCATTCTCTCTGTTTTTTCACCGCTGACACC 1091 30 100.0 38 .............................. GAAGAGATCGATGCAAACTATGTTCTCCACCAATTGGA 1159 30 100.0 40 .............................. TGGAGAAGGTTCATTTTCATGTCGTCTGTGGTTCTTGCAG 1229 30 96.7 40 .................G............ TCGATAAGCATACCTATCAATGACCCAAAGAATGTTTTAA 1299 30 96.7 37 .................G............ ATTGAGGATGATGTAAGTCAACAAAAACGTAGCAAAA 1366 30 100.0 38 .............................. TGTATTGGACTCAGTATAACTTTTCTATTGGCGAAATC 1434 30 100.0 39 .............................. TCATCGTGGCGGTGGAAGACCCCATAGTGGCGTCATAGT 1503 30 100.0 35 .............................. GGAGCAGACAACACTGCGACTGGATTCATCTTGAA TT [1518] 1570 30 100.0 37 .............................. ATGGTTGTCCATCCCGCCATCACCCGCGGTTGGGAAG 1637 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 23 30 99.7 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : GTTAGCTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGATTATACAACTTCACAGGTGGTGGGAACTAGGGTAAGAATTGAAAGTTAGGTATATGGATGGTTAAAGTTTCCCCGTCCGGTG # Right flank : GACCCGAAGCCCCTCAGCGACCAAGTAGGGCTTGAAAGAGCTCTAGTCCCAATAAGACCTCAAAAACAAACTTGCACTACTTCTGGGCAACTTTGTTAATGAGCCTCAAAATGTAGGTGTTCTCTTCAACGGTTGTTGCTCCCCTGTTTCTTGGGATGCCCAGGTCGATAGTAGCTCTAATCCCATATTCCTTGAGAAAATCGTGAGCCTTTGCTTTTATACTCCCATACTCACTCCTTTTTATCAGTCCATAGACCGTTGGTCCCCAGGAGCTCTGCCCATAGCCGTATGTGTTCTCACTCAGGAACTCCATGATGAGCTTAACATCCTCTCTGAACTCTCCACCTTGATACTCTTCAAAATGCTTCCCAACCAGTTTTTGAATTTCACTCAAATGCTTTCCAAACTCTTCGATGTTTTTCTCCTTTAACGCCGGCAACAGTCCCAAAAGAACTCTGTGGGAGATTTTCTCCGCTATGTTGCTTTCTCCTTTCACGCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 751-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000037.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 750 30 100.0 37 .............................. GATTGTTTCAGCAATTGCAAAGGGCTGGGCTGATAAA 683 30 100.0 38 .............................. CACAATTGAAGCAAAATTTGTTATAAGGTCTTTAATAC 615 30 100.0 37 .............................. CGAGTTATATTGAGCTTTTGGTGGTGTTAGTTAGTTA 548 30 100.0 38 .............................. CTTAAAGCTCCTGTTACTGTACTAATTGCAGATGAAAG 480 30 100.0 37 .............................. GTAGTGTTTAGATCATAAAGCACGTTTCCATTTTTGT 413 30 100.0 39 .............................. ATAAAACCCGGTTATTTGAGAATAACCAGCTGGTAGTGA 344 30 100.0 38 .............................. TTTATATAAATATCGTAGTTATTTCCGTTTTTCTTGAA 276 30 100.0 38 .............................. TTTCTAAAACCCCCCCAGACAAAACGCTTAATTTAGAG 208 30 100.0 40 .............................. TTCATTTACCTTTTGGTGGTCGCGGATTTTTAGGAATTCC 138 30 100.0 38 .............................. ATCAGTAGAACCATCAAGAGTTTACGTAGTGGTTAGCG 70 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TGAGGTTAAGGGGTGAAGCGAGGTGTTCTCGGCTCTCGTTGTGGGTCTTGATTTTCCAATTTTTCCCATTCTAGTGGTCTTATTTTCAAATCAAACCCCTTGCAGCAGTCTGGAAGTCTTTAGTAACTGGAAGTTACTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAGCGGAGGCTTATTAGAAATCCTTTGATATCCTCTCCTCGTGGAAATTTAACCTTTTTGGATTTAAGGATGTTTTAAGGCTTTATTTTTGATTTTACCTTTTGTTTTGTCTCTGGAAGTCTCGTGAACATTTTTGTGCATGAAAGAAAAGTAGTAAATTCGGGCAAGTGAGTGCTTTGAAGTCTTTTCTAGTGGCTTGGATTCGAGCCTTCTTATGGCTGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTCTCTAATTACTTTATAGGGAGTTTAGAGGAAAATTCGTCCCT # Right flank : GTTGCATAGCGCACTTTCAACTTCTTGATCACTTCGAGGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 41234-43073 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJMQ01000008.1 Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 41234 30 100.0 37 .............................. TCTATTATACCATCCCTTATTACTCTCTTAATCTCTT 41301 30 100.0 36 .............................. ATACTTCCGTCGGAGTTAGCTTTTGTAAAATCAAAG 41367 30 100.0 37 .............................. ATTTTGTCCTCCCAAAATTCAAAAATAACAAAATTTG 41434 30 100.0 38 .............................. AAAAAAGCTGCTGTGGTTGAATAGGCATCAAAGGTTAA 41502 30 100.0 36 .............................. TCTATTATACCATCCCTTATTACTCTCTTAATCTCT 41568 30 100.0 36 .............................. CTAAACCTATCTCCTTACACATAATCCTCTCCATAT 41634 30 100.0 37 .............................. AAAATTTAAACACATATGCAACCTGCCAATCGGTAAA 41701 30 100.0 37 .............................. ATCACTTGTTGAAGTTTTGAAGGATATAGCAGTCGAT 41768 30 100.0 37 .............................. TAATTGCATTATGCAACTTATCAACCCTTTCTTCCAA 41835 30 100.0 37 .............................. GAAGCTGTCCGTTTCGAGCATGCCTTTAACGCTTTCC 41902 30 100.0 38 .............................. ACGGTTTCCACGCATCAACAACCACGACACTATATTCC 41970 30 100.0 36 .............................. AGCATATATGGAGAGGTGGATGACATATTTAATATA 42036 30 100.0 36 .............................. CCAAATTTACGATTAACAAACTTGTAAATATCATCT 42102 30 100.0 38 .............................. ATGACTTAACAATATTCTTAACTCTCAAATCCTTCAGA 42170 30 100.0 39 .............................. GTCAAAATTTCTGATGCATTTAACATTGAAATATTCCCG 42239 30 100.0 37 .............................. TAACTATTATAGTTATAGCAATTAGCAATACTATTAT 42306 30 100.0 37 .............................. CTTTTATTCACTTTCATTATTTTTTTCTCTGGTGCAC 42373 30 100.0 38 .............................. AAGTTTGTGGACTTTGGAGCTGAACCTCTTGGACAGAA 42441 30 100.0 37 .............................. AAGGCACCTTCGGGTCTAACTCAATGATAATCCTAAC 42508 30 100.0 37 .............................. CTCGTAGTTTTCCCGCAACTTTGGCTCTGCCTCAAGA 42575 30 100.0 39 .............................. GTCAAAATTTCTGATGCATTTAACATTGAAATATTCCCG 42644 30 100.0 37 .............................. TAAATTTGGGGGTTAGCTCCTAATGGGTCTTGGAACA 42711 30 100.0 37 .............................. ATTACTGCAACTGCTACAAGTCCAATCCCCAGAGAAA 42778 30 100.0 36 .............................. GCCTCTTTTATAATATCATCCCCAACACTAGCAACC 42844 30 100.0 37 .............................. ACAATAACAGCCAACACGTATAATAAAGCAACAGAAA 42911 30 100.0 37 .............................. CACTCAATGGGCTGAAATAGAAGCCCAATTCAACAAA 42978 30 100.0 36 .............................. TTTTTTAATGAAGATGCGTTAATGCTCACATAATAA 43044 30 83.3 0 .........................ACCCT | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.4 37 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : ACTACGTGAGCGAATAGCCGAAGATTCTTTGTATCACGTTTAGCTTTTCCTTTTTTGGATTTTCTTTCTTCTGGTGGGCCAGTTTTGATGTTAAGGCTCTAAGGTTGCTCTGGAAGCCTTTAGTAACTAAAAGTTATTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAGCGGAAGCTCCTCAGGAATCCTTTGATATTCTCTCCTCGTGGAAATTTAATTTTTTTGGATTTAATGATGTTTTAAGGCTTTGTTTTTGATTTTGGCTTTTATTTTGTCTCTGGAAGTCTTATGAACATTTTTGTGCATGAAAGAAAAGTAGTAAATTCAGGCGAGTGAGTGCTTTGAAGTCTTTTCTGAAAGCTGGAATTCAAGCCAGTTGAAGGGAGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTTTCTAATTACTTTATAGGGAGTTTAGAGGAAAATTCGCCCCG # Right flank : AGTTCCCATTAGATCGTTAGAGTTATAAGCACTTAAGTCTTTTGGTTGATTGGTGGTTGTTATGAACTTTCAGCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //