Array 1 106487-106274 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGA01000017.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 95-0466 NODE_17_length_106534_cov_2.98454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106486 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 106425 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106364 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106303 29 93.1 0 A...........T................ | A [106276] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACC # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51987-53968 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGA01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 95-0466 NODE_28_length_72632_cov_2.9863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51987 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 52048 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 52109 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 52170 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 52231 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 52292 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 52353 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 52414 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 52475 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 52536 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 52597 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 52658 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 52719 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 52780 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 52841 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 52902 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 52963 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 53024 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 53085 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 53146 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 53208 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 53269 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 53330 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 53391 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 53452 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 53514 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 53575 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 53636 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 53697 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 53758 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 53819 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 53880 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 53941 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70476-72578 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGA01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 95-0466 NODE_28_length_72632_cov_2.9863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70476 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 70537 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 70598 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 70659 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 70720 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 70781 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 70842 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 70903 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 70964 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 71025 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 71086 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 71147 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 71208 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 71269 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 71330 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 71391 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 71452 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 71513 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 71574 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 71635 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 71696 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 71757 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 71818 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 71879 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 71940 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 72001 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 72062 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 72123 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 72184 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 72245 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 72306 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 72367 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 72428 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 72489 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 72550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //