Array 1 712076-712686 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE698882.1 Escherichia coli HVH 9 (4-6942539) acXug-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 712076 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 712136 28 100.0 73 ............................ AAAACGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGCA 712237 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 712297 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 712357 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 712417 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 712477 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 712537 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 712597 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 712657 28 85.7 0 ....................A...C.CT | T,C [712677,712681] ========== ====== ====== ====== ============================ ========================================================================= ================== 10 28 98.6 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 721744-723332 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE698882.1 Escherichia coli HVH 9 (4-6942539) acXug-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 721744 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 721804 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 721864 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 721924 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 721984 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 722044 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 722104 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 722164 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 722224 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 722285 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 722345 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 722405 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 722465 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 722525 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 722585 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 722645 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 722705 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 722765 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 722825 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 722885 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 722945 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 723005 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 723065 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 723125 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 723185 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 723245 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 723305 27 92.9 0 .......................-C... | T [723325] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //