Array 1 35756-36865 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543987.1 Photorhabdus australis DSM 17609 BO26DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35756 28 100.0 32 ............................ CGGATAGCCAGGGCTATTACGACACAACACAC 35816 28 100.0 32 ............................ CAGACAAATTCTGGGTTATTGTATTGATTAAC 35876 28 100.0 32 ............................ TTCAAACGTCCCTGCTTGCGTTCCAGCATCTG 35936 28 100.0 32 ............................ ACTTGCAGATTGTCCAAATAAAATGTTGATCG 35996 28 100.0 33 ............................ AGCTTGATCTACGTAGTACTTATTGTAATGAAA 36057 28 100.0 32 ............................ ACAAAAGCTGCCGCTGAAGCTGCTCAGGTCAT 36117 28 100.0 32 ............................ TTAGTTTTGCGTTCCATTGCGTTTTCCATACG 36177 28 100.0 32 ............................ GCACTGCGTAAAGCATCAAACAATGAGTCATT 36237 28 100.0 32 ............................ TTAGTTTTGCGTTCCATTGCGTTTTCCATACG 36297 28 100.0 32 ............................ GCACTGCGTAAAGCATCAAACAATGAGTCATT 36357 28 100.0 32 ............................ TTAGCAATGTTCAAGCAATCATCGTACATCTT 36417 28 100.0 32 ............................ TCTCACCCTAGCTGTACTGTTCCCTAAAACAC 36477 28 100.0 32 ............................ GATTGATCCCCACGGCGCGACGAATCTGTCTC 36537 28 100.0 32 ............................ ATACACTGATATTCCACTCGGCACACTGGCAG 36597 28 100.0 32 ............................ TCTCTCAAGGCGAGACAAGTTACCGACATCGC 36657 28 100.0 32 ............................ GTTCAGGCGCATCGAATTGCGCAAATCAGTCA 36717 28 100.0 33 ............................ CTGATGTTTCCACTCTGACGGGGCTATCAACAC 36778 28 100.0 32 ............................ AGGGTACATAATCGGAATACGTGCCCCGTTTT 36838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTTGGTTTGATTTTTTTACTATTAATATGTGGGCGTATTCCTACACAAGAGAATAAGCAACCTGAAATTGGTGATCCGGAATATTGGGAATATGTTCTCAAACCAGATTCTGGATATTTAGTTCCTCTACTGACAGGTTATCAGGCAATATTGCCGTTATACTCTGCTGAGCAAGTGGAGAAAACTCGAGATCTCAATATCCCATATTGCTTTGTAGAAGCAATCTATGGGGTAGGTGAATGGAAAAGCCCGCACCGTATTAATGATATTCTGTTGTTTGTCAAACAAGGGCTAATAGAAGACAACTCAACGTTAGACGTTTTCAGCTCTTATGGATTAAGTTCATCCGCTACCGTTCCTTTGGTTTTGACCCTTTTTTAGCGACTAATTATAACTTATTGATTTTATTAAGGGATTGGCCACTGCTAATAAAAAGGGTTTTTTCCGCTTTTTATAACTATGTTTTTAATAATCAGTAGGTTATAATTGTTTCCTAACT # Right flank : AAAGTACGAATTTCTGCACATCAATGACGACAGCATTTGCCGTTTTTTCAATGAAATAAGAAAGTCTTATCCTGACTATCATCAAAAAATTCATCTTATTGTGGATGGGGCGGGTTACAACAAAGCGCATCTGGTGAAGGACTGGGCTTATATCAGCAATATTGAGTTACATTACCTTCCTCCCTACAGCCCCAATTTAAACCCGATAGAGCGATTATGGAAGGTCATGAATGAACAGGTTCGAAATAACCGTTATTTCGCTAATAAACAGGAATTTCGAGACAAAGTGTTCAAATTTTTCACCACAACGCTACCGGATATAGCGGACTCGCTGACATCGAGAATTAATGACCATTTTCAGGTGCTAAAAACTGCATCTTGAAGTTTCTTGGGTATAGATATAAAGACACATAGATTGTATGTCTAGTTATTTGAGAGAACATAATTCTTGTTTAACTTTTTCATCCAATCTTGGGTTTTTAATAACAACTCGCCCACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14517-14904 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543990.1 Photorhabdus australis DSM 17609 BO26DRAFT_scaffold00049.49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14517 28 100.0 32 ............................ CACGCACCCCAGCGCTCTAAAACAAGCTGAAT 14577 28 100.0 32 ............................ TCGTCAGGGCTGGTGCGGGCTAGCTAAAGTAA 14637 28 96.4 32 ...T........................ TATTACTTAAACAGGGAATAAACATGCGGATT 14697 28 100.0 32 ............................ ATGAAAAAGTAAGCAAGTGGCTGATCCCAGCC 14757 28 100.0 32 ............................ GTTCCCGTTATGCTCTGGTTTCTACCCGTTTA 14817 28 100.0 32 ............................ ATTAGATTCACTATTGCCGCTTGTCTGGCTCC 14877 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAATCGTCAGTGGGTTAAGGTTAATATGCAACAGTGCACTGCCGTACAGGCAGCTTAGAAAAGGACAAGTAAAGTCATTAACGAATTTTGTTCGTGCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCAAAGTGCACTGCCGTACAGGCAGCTTAGAAACGGAAATTCAGGGTCATTACGGGGAGTTAAGA # Right flank : ATTAGAAATTAGAAATTAGAAAATACATAGGAACTATCTGTACTGTATGGCAGATTTATCAACGGAGGCAAGCATGAGTCATACCCGTTACGAAACTGATGTGCTCGCTTGGGCGAATGAACAAGCGGCATTATTGCGCGCAGGTAAATTCTCTGAGATCGATGTAGCCAATATTGCTGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAGTCGTATGGCGGTTTTGCTGGCCCATCTTCTGAAATGGCAATTCCAGCCTGGGCGTCGTGGTTCAAGTTGGCAACGAACTATCAAGGAACAGAGAAAAGCACTAGTATTGCATATAAAAGAGACACCCAGTCTGAAAAACACAATTGCTGATGAGGACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTATCGACGAAACTGGGTTGGATATGTTCCCAGATGAATGTATCTGGAATATAAATCAGATCTTTTCACAAGAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 65136-64569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONO01000007.1 Photorhabdus australis DSM 17609 BO26DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65135 28 100.0 32 ............................ GACTTCCGCACATGATTTGAGTTCCTCAGATG 65075 28 100.0 32 ............................ TTCGTCACGGGCCGGGCCAGTGTCTTTCACGG 65015 28 100.0 32 ............................ ATGCAATCAGGCGGCGGCGGACTATTGGTATT 64955 28 100.0 32 ............................ GATCGCAGAATCTTTGAGTCGAGACAACAATG 64895 28 100.0 32 ............................ CTTATAAGCAATTCCAGGGGGAGTTATGAATC 64835 28 100.0 32 ............................ TTGTTTATTCCTATTTGATTTCCAGATAACAC 64775 28 100.0 32 ............................ TTGAGTTGTGCCATCAAGATCGGCAGTCATAT 64715 28 100.0 32 ............................ AGCATTTCAATACTTATCGCTCTCATTATTTC 64655 28 100.0 32 ............................ AATGACTTTTGCAGCACTGACAGTCCCATTAG 64595 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCATTGAATGATTTGCGAGCATTACCTTGGTTAAAAGGACTCAGGGATTATACTGAAACCATGGATATCCAACCAGTACCTCAAGATACTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAGTGCGGAACGGCTTCGTCGTCGTGCGATTAAAAAGGGATGGTTGACGGAGGAACAAGCCTTGCAACGCATTCCTACCATCAAAGAACAACGTTCTGATTTACCGTTTCTGAGCCTTAAAAGTTTGTCATCAGGTCAAAGCTTTCTGTTGTTTGTCAAACAAGGGCTAATAGAAGACAAACCAACGTCAGGCGTTTTCAGTTCTTATGGATTGAGTTCATCCGCTACCATTCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTTATTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTTCCACTTTTTATAACTATGTTTTTTAATAATCAGGAGGTTATAATTGTTTCCTAACT # Right flank : AAGCCAGGGATGACTAGCTAAAGTAACCCCGCTACGATGTCGGGGTTGTTTTTGGCTCATTTAAAGTTGACTATAGAATATTCATTGAATTAAGATTGCATGACAATGTCATTCAATGAGAGTTCTTAATATGGCTACAAACCAATTAGTACAAACCCGTATTAATGGGGAGATTAAGGCAGAGGCGGCTGCGGTTCTGGCTGCTATGGGGCTGACTGTATCAGATGCTGTGCGCATGATGTTAACGCGAGTAGCAAGAGAAAAAATGTTACCTTTTGAACCTTTAATACCCAATGAAACAACAATAGCCGCAATGAAAGAAGCTCGCAACGGTTGCGGTAAATCATTCTCCACAGTAAAAGATTTAATGGCTGATCTTAATGCGGACGATTGATTACGCAAGCCAGTTCAAGCGAGATTACAAGAGAGAAAAGAAAGGTCGGCATCGTGAAATTCTTGATGATGCACTGATGCCGATGATTGAATTATTGGCTTCTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 72299-71488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONO01000007.1 Photorhabdus australis DSM 17609 BO26DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 72298 28 100.0 32 ............................ CTGCCGAAATTGAAATTCGGCAGGATCTTAGT 72238 28 100.0 32 ............................ AAATCCAATCTCTGTAGCTCATGCTGCAAGTC 72178 28 100.0 32 ............................ GGGTCGTGATCATCCTGTTTTTTATCTTGTAC 72118 28 100.0 32 ............................ ACAAAGTTATGATCATCCCCACGCCCAATATC 72058 28 100.0 32 ............................ CGGCGACTGCGTTTGATCCACGAGTAACCGTT 71998 28 100.0 32 ............................ AAAGTCTGCCATATATATTCTCGTTATTTGTT 71938 28 100.0 32 ............................ ACTGAATAACCAGATTACTTTTTGCTTATATT 71878 28 100.0 32 ............................ AAAGTCTGCCATATATATTCTCGTTATTTGTT 71818 28 100.0 32 ............................ ACTGAATAACCAGATTACTTTTTGCTTATATT 71758 28 100.0 32 ............................ GTCAACTTCATTAATTTCAATTTTAATCATAA 71698 28 100.0 32 ............................ TGCGAACAGATCGGCAACGCTTGAGATATTGC 71638 28 100.0 32 ............................ AAAAGCAACCATGGCAGCAGCACAAAAATTAT 71578 28 96.4 35 ...........................G CTTGGGATATGGCAAAATTGTATATAGAAGACTGC 71515 28 75.0 0 ..GT......A..T..AT.........T | ========== ====== ====== ====== ============================ =================================== ================== 14 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCTGTATCAACAAGACCTCTGTGTTCTCCATAATGTCCGGCAGTCATTAGTTCAAAAACGCGTTGCTCTCTCTAATCAAATCAGAGGACTGGCAGCAGAATATGGCATTATTTTTCCGCAACGCTCTGCGGCTCTTAGAGAGTCACTGTACGAGGCGCTTGAAGATGCCGATAGTGGATTAACGATGATTGCCGCAGGGTTATGAAACAATTCTATGAAGAATGGCTGAAGCTGATCCAGCACAGAGGAAATAGAAGAAACCCTCAAATCGCTATCATTGCAAACGGCTCAGTGGCAGCAACTCCAATCTATTCCCGGTAATCACACTAATACAAATTATATGATAGTATTTTGCTAAACCCTATTTTGACCCTTTTTTTGAGGTTGATTGTAACTAATTGATTTTACGGTAAAATTAATTGTCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAATCACTCTCGTTCGGTAAAGGCTCTATACTGTAAATTAGTAAAGAATTGTAAATTATTTTGATTTACATGTGCGATATTTCACCTTATATAAAATTTATGCATAATGTTTGCCATAAGTGAAATTAATTAGTTAGGTAGTGCTTATTATGGATAACAGCTTTTCTCCAAGTGACCTGAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGAATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAGACAATCATTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGTTGGGAACGGGGACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAAGCAGGTGTTTTGGTCGGTTTTTGTGGTGGTGGCGGTACACCACTATTTACGGCTAATGAGGTTGAAGTTGATATATCTTGGCTGACACCACAAAGTGAATATCGACCTACTGAATATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 82807-82001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONO01000007.1 Photorhabdus australis DSM 17609 BO26DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82806 28 100.0 32 ............................ ACAATGAAAGGTATCGCTGATTATTTGCGAGT 82746 28 100.0 32 ............................ TTACCATCCAACGCGGGAAAAGAAATTTAGAG 82686 28 100.0 32 ............................ AAAACCCGGACTGATAACCTAAACGGTGACCT 82626 28 100.0 32 ............................ CACGCCGGTTTGCTTCGCTTTGACGAGTACAC 82566 28 100.0 30 ............................ CTTTCGCTTTATTTGGGTGCCTCTGGCCAA 82508 28 100.0 32 ............................ GTTTATGACCGCGAAAAATAGTCAGCTTTTTA 82448 28 100.0 32 ............................ TACTGTCACTGTTGTCACCCTCTCTATATACT 82388 28 100.0 32 ............................ GGATGCGGCTCGCAAATCCAAACCCTGATAAT 82328 28 100.0 32 ............................ TGATGCTTTTTATGTCCATTCTTTAATTTTGA 82268 28 100.0 32 ............................ CGTTCTTGCGCCGGAAATCCCGGTTGGGAAAT 82208 28 100.0 32 ............................ TGATGCTTTTTATGTCCATTCTTTAATTTTGA 82148 28 100.0 32 ............................ CGTTCTTGCGCCGGAAATCCCGGTTGGGAAAT 82088 28 100.0 32 ............................ GATTAATGAAAATACATTAATGGAAACTAATC 82028 28 92.9 0 .....................C.....T | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAGAATTGGCAGAAAAAGCAGGTGTGGAGGTTGTGATGGATCGCTGCCCTAAAATTGAAATTCCAAGATTGGGGCTGGAAAAGTAATTTTTCCAGCTTGCTACTTTGATATTCCGTCAATGAATGAAAGGAGTCTGACGTTAATATTTAAGTTACCAAACTAAACGGGCGGGAAACTGCGTCAGGTTCCGAATATGTAGATCATGCCTGAAATGAATGCTTAGCAGAATTCACTGCTCTAAAATCTAATTTATACATTTATTACAATATGTTAAAACGAATTTGGTTATTTCTGTGATTTCTAAATTCTGCCTAAATTTGTACTTACATTGACTAAGATATAGTGTTTCTGTTACACCCTGGTTTTTGACCCTTTTTTAAGGGGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACCGTCAGTAGGTTAAGGTTAATATGCAACA # Right flank : ATAATCACTCTCGTTCGGTAAAGGCCCATGCTGTAAATTGGTAAAGAATTGTAAATTATTTCGATTTACATGTGTGATGTTTCATCTTGTGTAAAATCTATGCATAATATTTACCATAAGTAAAATTAATTATTTAGGTGGTACTTATTTATGGAAAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTCGCATTCCAAACGCTCTAATACTTATTACCTGCAATATTGCAGAGTATTAATTAATGGTGGCTGTGTCGAATATGTCACTAATGAGGGAAAACAATCACTGTGTTGTAAATTTCGCCAATGTTGTATCAGTGGATTTCAAAAATCTGAGGCATTGGACACTATGATTGATACCTTACAAACAACCGCTCAATAACTGAGTTAGGTGGTACGATGAATATTCTCTTGGTATCTCAATGTAGCAAACGCGCGCTAACAGAAACCCGCCGAATTCTGGATCAATTTGCTGAACGTAAAGGTGATAGAACCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //