Array 1 3014887-3013217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020101.1 Salmonella enterica subsp. enterica serovar Heidelberg strain UFPRLABMOR1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3014886 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3014825 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3014764 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3014703 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 3014630 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3014569 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3014508 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3014447 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3014386 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3014325 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3014264 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3014203 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3014142 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3014081 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3014020 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3013959 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3013898 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3013837 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3013776 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3013673 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3013612 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3013551 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3013490 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3013429 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3013368 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3013307 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3013246 29 96.6 0 A............................ | A [3013219] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3032271-3031145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020101.1 Salmonella enterica subsp. enterica serovar Heidelberg strain UFPRLABMOR1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3032270 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3032209 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3032148 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3032087 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3032026 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3031965 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3031904 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3031843 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3031782 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3031721 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3031660 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3031599 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3031538 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3031477 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3031416 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3031355 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3031294 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3031233 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3031172 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //