Array 1 260824-262071 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCH01000001.1 Salmonella enterica strain BCW_2511 NODE_1_length_440644_cov_4.19498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260824 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 260885 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 260946 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 261007 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 261068 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 261129 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 261190 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 261251 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 261312 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 261373 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 261434 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 261495 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 261556 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 261617 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 261678 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 261739 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 261800 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 261861 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 261922 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 261983 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 262044 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 278331-280113 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCH01000001.1 Salmonella enterica strain BCW_2511 NODE_1_length_440644_cov_4.19498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 278331 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 278393 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 278455 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 278516 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 278577 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 278638 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 278699 29 96.6 32 ...........A................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 278760 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 278821 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 278882 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 278943 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 279004 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 279065 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 279127 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 279229 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 279290 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 279352 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 279413 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 279474 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 279535 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 279596 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 279657 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 279718 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 279779 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 279840 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 279901 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 279962 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 280023 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 280084 29 96.6 0 ............T................ | A [280111] ========== ====== ====== ====== ============================= ========================================================================= ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //