Array 1 8325-9331 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUP01000159.1 Pseudomonas aeruginosa isolate 138.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8325 29 100.0 33 ............................. TTCGGCATTGTGCGCGGTAGCCACGTACCCTGG 8387 29 100.0 32 ............................. CCGAACTGATTGCCGCTGGCCAGGTCCTGGTC 8448 29 100.0 32 ............................. TTGCCTGAGTTCCGCAGCGCGGCGATCAGCGC 8509 29 100.0 32 ............................. GACTTGGCCGGCTTGAAGAGCTACCTGGGCCA 8570 29 100.0 32 ............................. CCGTTGATCAGCAGGCCGGTGTTAGGCCCCAT 8631 29 100.0 32 ............................. ACCTGAAGCGCGAAATCATCCTGTCTGACGTG 8692 29 100.0 32 ............................. GCGTGACGAATTGGCCCGACAGTTCAACAGCG 8753 29 100.0 32 ............................. ACATAGCGAGACCTTGGCCGATCAACGGCATC 8814 29 100.0 32 ............................. CAGATCGAGAATGCCCAGAAGGGCATTGGGCG 8875 29 100.0 32 ............................. CGTGAAGCAGGCGGACCAGATCATGACCGACC 8936 29 100.0 32 ............................. CAGGCGCGCGATTCCGTGGCTGGACTCGGTGA 8997 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACCGGC 9059 29 100.0 32 ............................. CCGCCATGGCCGAGCGTTCGAGGCGCACCGAG 9120 29 100.0 32 ............................. AACCATGCTGGCAGTTCTCTCGACCAGCAGGG 9181 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 9242 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 9303 28 79.3 0 A..........A..C..-.....A....T | C [9307] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTTCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGTTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18504-19937 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUP01000159.1 Pseudomonas aeruginosa isolate 138.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18504 29 100.0 32 ............................. GCCCTCGCTCAGCCGTCGACCGCGTCAACGCA 18565 29 100.0 32 ............................. GCGTGTCGGCTACCTGCTTGCTTCTTGGGTGG 18626 29 100.0 32 ............................. GCGTATCAGCGCAGCTCGATGTCGGACGACGA 18687 29 100.0 32 ............................. GACCAGGTCACCGCAGCCTATGAGGGGGAAAT 18748 29 100.0 32 ............................. GCCTCGCTGGATGACTTCGTCCGCACCATGAT 18809 29 100.0 32 ............................. TTGGCGGCTTGGTAGACGATCCCCCATCCCCC 18870 29 100.0 32 ............................. CAAGTACTCGGAAACTAGGAATCCATGGCTAC 18931 29 100.0 32 ............................. TTCTGTTCCCCGACCGCCGTTTGACGGTCGGG 18992 29 100.0 32 ............................. TGCTTGGCCGGCACGGTATCGGCGCAGCCGCG 19053 29 100.0 32 ............................. ATTACGAGCAGAAGCGTATAGCGTGTGCAGCA 19114 29 100.0 33 ............................. CACAGAATGCGCTCGCTTTTACTGAGCAGTGGT A [19136] 19177 29 100.0 32 ............................. TCGAATGGCAGCCAGTCGGGCGAGGGGCCGCC 19238 29 100.0 32 ............................. AGGTGATGCTCAACGACGATAAGCCCGTGATG 19299 29 100.0 32 ............................. GCGGTTTCATCACCAGCGCTACTGTCGGCGAG 19360 29 100.0 32 ............................. ATGCGAGCCTGGGCCGGACCATCCATGTGCTC 19421 29 100.0 32 ............................. TAAAAGGTGCAACACCCCTTCCTAGGCCTGTG 19482 29 100.0 32 ............................. ACGGTGATTGCGTGCCGTTCCATGACCGGAAA 19543 29 100.0 32 ............................. TCCGCGCGCGGAGTACACCTGACGGACCTGGC 19604 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 19665 29 100.0 32 ............................. GGACGATGTCTCGCGTAGCGATCTCGCTCGTC 19726 29 96.6 32 .........................G... CCAACAGGTAGCCAACGCGCCTGGCGATGGTC 19787 29 100.0 32 ............................. AACGCCCTTTCCAACTCATCAGCGCCAGCAGG 19848 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 19909 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4618-4765 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUP01000174.1 Pseudomonas aeruginosa isolate 138.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4618 28 100.0 32 ............................ GAAGCGACTTAGCACAACCTCCTCCAAGACTT 4678 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 4738 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCGTCGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGATCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //