Array 1 8806-9191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSD010000048.1 [Ruminococcus] lactaris strain D43t1_170807_H11 NODE_48_length_17843_cov_15.0932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 8806 29 100.0 44 ............................. TGGCTGTCCAGAGTAGCATGAGGGATCTAACGATTCCTCATAAT 8879 29 100.0 39 ............................. GCTCAAATTTTGAGGAAGCTGGCAGATTTTACTCTGCCA 8947 29 100.0 41 ............................. CTTTCTGTCTTTTAATGATAAAGTCAATCTTGGTGCTGAAC 9017 29 100.0 46 ............................. GTTCCATAGGTATTCGTTACATTTAAACTCATATTCTTTCTCCTTC 9092 29 100.0 42 ............................. TTTTTCAAATCCTAAATCTTCTTCTGGAAATGGTTTTTTTTC 9163 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ============================================== ================== 6 29 99.4 43 GTCGGACATTACCTATGAGGAATTGATAC # Left flank : GATTTTCTGTACCAGGCAGGTCTGGGAAGTAAAAATGCACAGGGCTTTGGAATGTTTGAAGTGATGTAGCAAAAGTGATCATAATTAAAAATTTGATCTAGGGTATTGCAATGGAAAAAGCACTGGAAGGGTGCTTTTTCTGTTGCACAAACCCAGCAAGAAGCATCTGTGTTTACATGAGAAGCAACTTGCCAACAGAAAAGAAGTTAAATACTTTGGTAAAAAAGTCCGTCGACCTCAAACCCTTGCAAATACTGGGCTGGAAGGGCATCAAAAGCAAAAATACAGCCATTTTGACCTTAAAATATCCATCTTGAGAGCAAAAAGTCCGTCGACCTCGGGTAAAAAAATCCGGGGACAAAAAAAGTGGGAAAACATCGAATTTACAAGGGAAATTGGTATTTGTGCAAAAGTGAGGTCGACGGACTTTTTCGATGGAAATCGGTTGATTTTGAGGTGAGATTAGGGTATTATGATGGAGACAGCTGATAAATACTGCT # Right flank : CGTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGGCATTACCTTCCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATCGTAACTACTAACTTTCAACTTTATGACATGGAGAGACAGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCCGCAGCTAAGGCATCATTTAAGGGAAAAAATGACAGTAGTGGGATGGATGGTGTACGAGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAGAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATTCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGTACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGATTTCTCAGCTCATTCTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1390-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSD010000099.1 [Ruminococcus] lactaris strain D43t1_170807_H11 NODE_99_length_10409_cov_8.24226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1389 32 100.0 35 ................................ TCTACCGAAGAGTTTAAGAAAACGAGGTGATGCAG 1322 32 100.0 33 ................................ CATTTGTATCAACGTATGCCATTACAGCACATG 1257 32 100.0 34 ................................ GATTGTAAACGCTGCCTTTCCCTTCGGGCAGTTT 1191 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 1126 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 1059 32 100.0 36 ................................ TGTTGGATATGATACCTCAATCCCTGTTGGACAGAA 991 32 100.0 33 ................................ CGTGGGGCAAACGTGCAGATGCAGTATAACGGC 926 32 100.0 36 ................................ TCGCATCCGTTCCTGACCTGATATACTCATACGGCC 858 32 100.0 35 ................................ CATCTAAATGGTAAATAGCTTTTTTGCCGTATTTA 791 32 100.0 33 ................................ CTGCAGATATCTTTTTCTCATCATTCCCCATCT 726 32 100.0 33 ................................ TTGGTAATTATCATCTTTGATAAAAACACCTCT 661 32 100.0 33 ................................ ATTTGTGAAGTCGGCGTGGGGGTGGGAGTATGA 596 32 100.0 34 ................................ AATGATGTGCTGCGGACCGGCTATCTGAAAATCA 530 32 100.0 34 ................................ ACTTACCCGGCATCCTGTAGATAGCAGCAGCTCT 464 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTGAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATGAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACATTTGTACTTTTTTCTTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1386-3594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSD010000087.1 [Ruminococcus] lactaris strain D43t1_170807_H11 NODE_87_length_11619_cov_12.3232, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1386 36 100.0 30 .................................... TTACACTGCTGCCCGATATCTGCCACCGCA 1452 36 100.0 30 .................................... CGGATCATACGATTCCATTGAAGAAGATGA 1518 36 100.0 30 .................................... GCATTATGGATTGTAGTCCTTCACTGTCAA 1584 36 100.0 30 .................................... CGGAAACGGCATCATCCCGCACTGACTGGG 1650 36 100.0 30 .................................... TTTGTCAGTTCAGTGTCCTCTTCACACTCA 1716 36 100.0 30 .................................... GCAGCGGATGCACGTTTCTTTAATGTCTCC 1782 36 100.0 30 .................................... GCCGTCATCGCTGTGAGTTCATTTTTATCC 1848 36 100.0 31 .................................... CATCGCCGAGTTTCTATAGCCGCCTGATGTG 1915 36 100.0 29 .................................... CTAAAGAACGCTACCCGGAACTTTTTAAT 1980 36 100.0 29 .................................... CGGCAAAGGACGACACAAGAAAGATCCAG 2045 36 100.0 30 .................................... AGAAGTGTAAACTCTAGAAATATATCCATT 2111 36 100.0 29 .................................... TACTCTTCCACCCTTTTGTACAAATTTCT 2176 36 100.0 30 .................................... TGATTGTAAGTCCGATGGGAGCAAAAAGTC 2242 36 100.0 29 .................................... ATATGCTTGATGAATCTATTCGTGGTGCA 2307 36 100.0 30 .................................... CATTCGCCATCGTGGATCCGGTGGCAAGGT 2373 36 100.0 29 .................................... AATGCAGCCGTACCATCTGCCGCACAGTG 2438 36 100.0 31 .................................... AGGAGCCAAAAGAGCAATGTTGGGTGGAACA 2505 36 100.0 30 .................................... AGTGGAACGGTCATCTGATTCCAAGAAATG 2571 36 100.0 29 .................................... AAAACTTCAGGATATCATACTGAATTTCA 2636 36 100.0 30 .................................... AGCATTTCGTCTTGGAACGACCTTTGATAT 2702 36 100.0 30 .................................... TCAGCACCATAGCACAGAGGTTGGGTGTAT 2768 36 100.0 30 .................................... ACCACAGGCGGTATATCCTAAATATTTTCC 2834 36 100.0 30 .................................... AATGGAAACATAGAAACAGCAGGAAGGTTG 2900 36 100.0 30 .................................... TTTTCTTTTTCCGACATCTGATCACCTCGC 2966 36 100.0 30 .................................... AAATGGAGAAACTGCAGGAGATTGGACTGA 3032 36 100.0 29 .................................... GAACAACTGGAATCTGTCGACCTTCTTCC 3097 36 100.0 30 .................................... TGTGTACCACCGCATAATTGCTGATGATCC 3163 36 100.0 30 .................................... TCGCCCTTGTTGTAATCTTCTTGAAGTTCT 3229 36 100.0 30 .................................... GACTTAATCGGTGAGCATGGAAACGTGGCA 3295 36 100.0 30 .................................... CTGGTTTTTGATACCACCGATTTTTACAGT 3361 36 100.0 30 .................................... TGTATAACAGCATACTTATACATAAGTCCA 3427 36 100.0 30 .................................... AGGCTTGAAAGAACTCATGAAAGCATTTGA 3493 36 100.0 30 .................................... AAAGCGTTATGGTTACACCGAAAGCCTTTG 3559 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 100.0 30 GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Left flank : TCCGGGAAATTGTCTTCATTCACCGTAATCCCATCACTTATATCAGTTACTGGCACTGAATTTATTTCTTTATGGTATTTGTCAAAATCAACTATTAATTTTCCACACTTTTTCTCCCACATAATTCCAATATGGTTCTTGTATTTTTCAACATAAGCACGTCCATATTTTTCAATCAGCCTTTGGCCAGCTATATTCGTTGCCTTTTTCTCGCTTATCATAACCTGTCACTCCTAATATCTCATTGATCCAATCCTGGGTGCTTGCAGTAAACTCTTTTGTATTACCTTTCAAATCTATTATAATACTTTTTTCTTGCCAGGTAAATAGCTTTAACGTCTCTCGATCTTCCGGTGACGCAATTATTTTCGTCATTGTCGGATGGGAATGAGCTGTCCACTCGTAATGATTTTCTTTTATAATTTTCCATGCATCATGCGGAATATGCCACGTTTTTGAAGTTCCATGTATAAGAATCTTTGATGATTTCCCTGTGCTTA # Right flank : CCTCAAATTCAAAAATGAAATGCCATCATTCGCATAAAATACAGGTACTCAAACTGTTAGGATGTTATATTTCACATCCATCTTTATCTATAATATACCTTGTTACACCCTCAATGCAATCTCTCGCACAGGTTTCAATCAATAAAAGCTGAATTTCCTGATACGTCGCTTCTTTTATTAATTCATCAATCTGCTGATTTGATAAATAACTTCGCAAATTAACAAATACAAAAAGCTTTTTCTTTAATAATCGTTCCACTATTCGCATATATCTCACAAGACGTTCTAAGAAGTTTTCTTCCAGTACCTCATATTTAATACCAAAAGCTTTAAATAATGAGGCAAAATCTATTTCATCCGCAAGATCAAGGATATAGTCTGTCTCCTGTTCAAGCTGTAATAAATACTCTTGCAGATATTGCTTCATTTCCTGGGTTTTCACATAGAATCGTTCGTCCGCAGTAAGCTTTTCCAATTCCATATAAAGTTTGCTGATCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //