Array 1 428-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROE01000159.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001350 CFSAN001350_contig0158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 366 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 305 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 244 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 183 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 122 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GGGCCACTTATCAGCAAACCGGGCATCCAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROE01000166.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001350 CFSAN001350_contig0165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 68 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 129 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 190 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 251 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 312 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 373 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 434 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 495 29 100.0 31 ............................. GATGATCGTTTTTTCGTTACGTCGCGCAAAT 555 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 616 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 677 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49582-48331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROE01000021.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001350 CFSAN001350_contig0020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49581 29 100.0 32 ............................. GCGCGCCATTGCTGAGGTAAACCGGCGATTAC 49520 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 49459 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 49398 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 49337 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 49276 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 49215 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 49154 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 49093 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 49032 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 48971 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 48910 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 48849 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 48788 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 48727 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 48666 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 48605 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 48544 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 48483 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 48421 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 48360 29 96.6 0 ............T................ | A [48333] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGACATGCCTGCCACTGCTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 862-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROE01000087.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001350 CFSAN001350_contig0086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 861 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 800 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 739 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 678 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 617 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 556 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 495 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 434 29 93.1 33 ..........................A.C GCGCTGGCGCAACGAGTCGTACCTGTACGCCAG 372 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 311 29 100.0 33 ............................. CCGAAAAACATTGAGTGCTTCTTGTACGTTCAT 249 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 188 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 127 29 100.0 32 ............................. CCTGGAATGGTTTAATGGTGCAATCCAGGATA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCTGGCTAATCTGCGTGTTGATGTTGTCCATGCGTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //