Array 1 1340788-1334668 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012333.1 Parascardovia denticolens DSM 10105 = JCM 12538 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1340787 33 100.0 35 ................................. AAATCATAAACCGGCTCACATACAACAAGGTCAAA 1340719 33 100.0 35 ................................. TTGAAGACATTGCGATGAACATTCCCCCCGTCCCT 1340651 33 100.0 33 ................................. ATCGACGAAATACTCAGGTTTGTACTCATCCTG 1340585 33 100.0 34 ................................. AACTGATTGGATTACCAGTCCTATCATTGAAGTG 1340518 33 100.0 33 ................................. ATGATTATTCACCTTCAATCGGTTTTATCAGCG 1340452 33 100.0 34 ................................. TCGTAGAATGCGAAAAGCTGCATGACAATGTTAT 1340385 33 100.0 34 ................................. TTGTGTTATCGTATATGATTGAGCTGGGGCAGCC 1340318 33 100.0 34 ................................. ATGACCGGATAGGAGGAAATGAAACGCCTTTGAA 1340251 33 100.0 34 ................................. AACAACCCGTATTTTTATAAGATAGGTTTGAAGA 1340184 33 100.0 35 ................................. CTCCTGATTCTCATCGTCCTTCACGTTGTTTTCAT 1340116 33 100.0 34 ................................. ACGACCCGGTGCGGGGCTTTTATCCCGCCCGGCG 1340049 33 100.0 33 ................................. AACTCAAATACATTATCCATGCCGAGGAACTCA 1339983 33 100.0 34 ................................. CCACACATTGCCGGGCCATTGGATCGCATAACCT 1339916 33 100.0 35 ................................. AGCACGGCGGTCTGCTTGCCGATGGCCTCCTGCAA 1339848 33 100.0 32 ................................. TCAACCCGGTAAACCTTCCCCACCGTGGACGG 1339783 33 100.0 34 ................................. AGCACGGGCGACGGGTTCGGCTTCGCCGGAAGCG 1339716 33 100.0 34 ................................. CCGTGCTATGGGACCAACTTGGACTGCTACTGCG 1339649 33 100.0 34 ................................. TGCGACTTTGTCGACGTCGCCGACTGGCTTGACG 1339582 33 100.0 33 ................................. TTCTGAGCGTGTCTCTTTCCGGGGTCGGCCCAG 1339516 33 100.0 35 ................................. CGCGACTTTGTCGACGTCGCCGACTGGCTTGACGG 1339448 33 100.0 33 ................................. ACCCCGGTAGAAGCACGAACCATTTTTGGAACT 1339382 33 100.0 34 ................................. CAAGTCTCCAACCTTGTTTTATCAGACACGGTAA 1339315 33 100.0 34 ................................. ACCACCAGCCAGCAGACGCCCATCCGGCAGGCCC 1339248 33 100.0 34 ................................. TTTATCACCATCCTTACCAAGCTGATACTGATGC 1339181 33 100.0 33 ................................. GAGCTGCTGGATGAGTGGCCGGAATCCACGATG 1339115 33 100.0 34 ................................. CGTCTGTTGACCGGCATGAGACAAGGGGAGATCC 1339048 33 100.0 35 ................................. GCCGAGACTTGGTGACCGGCCCCTGGTCGGTCTGG 1338980 33 100.0 34 ................................. CACACGACATTATCCAAAAAATCTGTCAAAGGAC 1338913 33 100.0 34 ................................. CGTCTCGCTACGCATGGGGCCATATGCGAGAAAA 1338846 33 100.0 33 ................................. GTCCTGTCAAGAACGAGACTGTCCTGATCCAAG 1338780 33 100.0 33 ................................. AACGGCGAGTAACGGGCAACCCGCATGACCATG 1338714 33 100.0 34 ................................. GCCGAGACTTGGTGACCGGCCCCGCCAAACCCCA 1338647 33 100.0 33 ................................. ACGTCATCCCATCGGTCGAGATCCCACACATCG 1338581 33 100.0 34 ................................. CTGTAAACGCATCTTAACCTCCTTGATACCTCAA 1338514 33 100.0 34 ................................. GGGACAAGGATGACGCCCAGGAGCGTGCTCAGGT 1338447 33 100.0 34 ................................. AGACCGTTGATGTCGATTTTTTCCGGCTCCACCT 1338380 33 100.0 34 ................................. TGTATGTTTGGCCCCTATGCATACTTTTGATGTT 1338313 33 100.0 34 ................................. AGAACAAATATACCGCATATTTATTCCGCATCCA 1338246 33 100.0 34 ................................. ATCCCCGGCATCGCATACTTTTTAAAACTGTGCA 1338179 33 100.0 34 ................................. TCTCCCGCTCTCAAGGCAAACAGAGTGGAACGGT 1338112 33 100.0 35 ................................. AAAGTCCGACCTACATAAAAGACAAACTGCCACGG 1338044 33 100.0 33 ................................. TGAGGTGTAGGTCATAAAAATCCACCGATTGAG 1337978 33 100.0 35 ................................. GACGGAAGAGAAAGGGGAGCGGCTCATCACGGACG 1337910 33 100.0 34 ................................. AGCTCCCTATTATACACGAGGGGCAGGCTTTTCG 1337843 33 100.0 34 ................................. CAATATCCTTCTTTTCCGGCCCTCTTGAGCAGGG 1337776 33 100.0 34 ................................. ACATCCCTCAATGGATTGCTCCGGATAGCCGGTG 1337709 33 100.0 34 ................................. AGCGTGAATATTGATACTGTCCTCGTTGTTATCA 1337642 33 100.0 33 ................................. CCCACTCGCCGGGCTCTCTATCGCAACTTTTTA 1337576 33 100.0 34 ................................. CCCGACGACGAGGCGACCGGGCCGACGCGGCGAA 1337509 33 100.0 33 ................................. GACCATTACGGACCATAGTCGCCAGGCTGATGG 1337443 33 100.0 34 ................................. GGTAAAAACTAACCAGAAAGGACACCTACCATGG 1337376 33 100.0 35 ................................. CTTGCTTGGCCAACCAGGCCTCCAGGTCGGCGATG 1337308 33 100.0 34 ................................. GTCGAGGTCCCATGCTTTGTCGCCTATCATACGT 1337241 33 100.0 34 ................................. TGCCATCCTCCTTAGTAGCTTATCTGATCATATC 1337174 33 100.0 34 ................................. ATGACACCCACCGGCCGCATCCTCGTCATCAACA 1337107 33 100.0 33 ................................. GGTACATGCTTAATAATCTAAGTTACATTTGCG 1337041 33 100.0 34 ................................. AGAATAAATATACCGCATATTTATTCCGCATCCA 1336974 33 100.0 33 ................................. TGGCTGACGGCACGCCCGTTCTCTGCCATGATG 1336908 33 100.0 33 ................................. AACGGTTCGTCCTGCATTTCACGGAAACGGAGT 1336842 33 100.0 33 ................................. TATGGTAATAAGGATGATTGGAAGACGCTCTTC 1336776 33 100.0 32 ................................. ACACCCCTTAATGGATTGCTCCGGATAGCCGG 1336711 33 100.0 34 ................................. TGGACCGGGGAGGGGAGCAAGCTCACCTTGATTG 1336644 33 100.0 33 ................................. CCTTCGCTGGTGGAGTCGTCGACATCCGTCTTG 1336578 33 100.0 33 ................................. CGCGAAAAGGTCATCGCTGACTTGGAATCCTGG 1336512 33 100.0 34 ................................. AGAAATGTAACATATGCTACACAGAATGGCGTGA 1336445 33 100.0 35 ................................. ACCCGGCGCACCTTCCTGCCGCAGGACGGGCAGTA 1336377 33 100.0 33 ................................. AATCCCCGGAGGCGGGTCTCGTCAATCCTCCGC 1336311 33 100.0 34 ................................. GTCTCGCGTAGTCGACGCTGTGGTTGCTTTTGAG 1336244 33 100.0 33 ................................. TTGACCAGAAGCCTGGTCTTGGCGTCGACGTTA 1336178 33 100.0 33 ................................. GCCCACTGGTCGCAGGTCAGCTCCAGCCTGTCT 1336112 33 100.0 35 ................................. ATCCAAGCCAAACTGATAAATCGGTTATCCGGAGT 1336044 33 100.0 36 ................................. TTGAGAAGCAACGCCACGGCGTACGGCAATGCGCTG 1335975 33 100.0 35 ................................. GCCAACCACCTCGGCGTCAACAAGAACAGCGTGTG 1335907 33 100.0 33 ................................. TCCGCTGTCCCCGCCGCCGGGTTGGAGTCGGAG 1335841 33 100.0 35 ................................. AGATTGAAGGTCGCCGTATTCCCATACGGGCGCAC 1335773 33 100.0 34 ................................. GAGGTGGCTGTCTGCGAGGCCGAGGTGGGTGACG 1335706 33 100.0 35 ................................. GACGGGAACAGCCTCAACAGCGTGAACCCCGACGG 1335638 33 100.0 35 ................................. CGATACTCGCAGTAGCACCGGTGCTCCCTGTCGAT 1335570 33 100.0 34 ................................. TGATTGATTGATAGTTCTATTATAACACTATCCC 1335503 33 100.0 34 ................................. CTTGACCGGCCGTCACGCGGAGGTGAAGTTCCCT 1335436 33 100.0 35 ................................. CTCGACATCCTCACCTGGATGAAAGCACCCCGCCA 1335368 33 100.0 34 ................................. CCTTTGGGAAGGAACATCAAGGATGGGAGCCTGA 1335301 33 100.0 33 ................................. AAGTCCTGGTCGTTTTTACTTTTCACGTCGCCG 1335235 33 100.0 34 ................................. TGTGTTCACAGCACCGGAAACGTCGGCCCACCCG 1335168 33 100.0 34 ................................. CTCATCGACTACTGCCGGAACCTGAAGCCCCTCT 1335101 33 100.0 34 ................................. ACCCACACGCTCCACACGTACGTGTCGGCCGCCA 1335034 33 100.0 34 ................................. AACCCCGCCACCAGACGGTTCAGCCGGCCCACCG 1334967 33 100.0 34 ................................. GGATTCCTGATATGGTTTTTCGCCGTCAGATAGG 1334900 33 100.0 34 ................................. ACTCCAACTTTTGAAAGGAAGTCGAAGATGTCTG 1334833 33 100.0 34 ................................. AACGCCGACAAGCGCACCCCCATCCTCGCTACGG 1334766 33 100.0 33 ................................. ACCTTGCCGGGGTCGGTGTAATGCTCCTGGAGG 1334700 33 93.9 0 .............................G..C | ========== ====== ====== ====== ================================= ==================================== ================== 92 33 99.9 34 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : TACGATGGAGGTTGCAGGGCAAAGGCGATTACGTAGGGTCGCGAAGGTGTGCTCAAAATTTGGTCAAAGAGTACAAAACAGCGTTTTCGAATGTGAAGTGACTCCTGCGGATTATCTTTTGCTTAAACACGATTTGTTCGAAATCATGGATGAGGAAGTGGATAGTTTAAGGTTTTATAATCTTGGGAGTAAATACTCGAATAAAATAGAATACCGAGGTGTTCAACGGCACATACCGGTGGATGGCATTATGATGATCTAAGGTTTCGGGACCAGATGGGAAGCGAAACATTACGGTTGTGCGGAGGTGAAGCTGTCATAGAAATCCTGGGATCTTCGCACCAAGTTTTAATATGAGCTAAATGGTTTTTAGTAATTGCGCCTTATTTGTCTTAGACATTTTATGACAAAAGCGTCAATTCTCTGCCTCTTATAGGTAGAATAAAGGAATAGAGATGGATTCGTGTCTTGATTTCTGAGATTATTTGTCCATTTCTGCG # Right flank : CTGATGCTGATGACTATGTGGCTAGTGTCATGATGGATTTTTTCACAATGGATAGATTAAAAATGTCAGTCCTCCAGTGATTGATCGTTTCTGCTGGGTACGATTCTGATTCGCATAAATCATGTCAAGGGGTCTTATCCTAATTCAGCAGATAGATTGGAGCTTATCTGAAGGCTTACTGTTGGCTTACGAGCAGTTTCGGTGAATCTGCATAGAAACCAGACGTTCTCTTTTATACTCTTCTGCATTTTTTTACAGTGCTGGTAAGAGATGCGAGACTTGCACAACAGTTATGGTCGGGAAAGCTAGTCGGAGATGGTGCCGAGTCATGTCGTACGCTGAGAAATTCAGACAAAGATTAGCAGCTAGTAAGATTCAAAATAGGCACAGAGAAAATGGCATGGTGAACGAAATAATCAGCGTGTCAATCATCCAGTCCGTAGGACTCACTGGTGATATCTCACATTAACAGAAACGCTATCGACTTGTTGAATCAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //