Array 1 39-1227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGR01000013.1 Salmonella enterica strain BCW_5905 NODE_13_length_109045_cov_3.23919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 100 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 161 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 222 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 283 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 344 29 100.0 32 ............................. GAGTTGTTTTTCTTGCAAATTCCAATTCTTTC 405 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 466 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 527 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 588 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 649 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 710 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 771 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 832 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 893 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 954 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 1015 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 1076 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1137 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1198 29 93.1 0 A...........T................ | A [1224] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCGATCTAACAACATTAATAAAAACCGGTTTAAGCGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76595-77660 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGR01000019.1 Salmonella enterica strain BCW_5905 NODE_19_length_94034_cov_3.21368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76595 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 76656 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 76717 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 76778 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 76839 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 76900 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 76961 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 77022 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 77083 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 77145 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 77206 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 77267 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 77328 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 77389 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 77450 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 77511 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 77572 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 77633 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93796-94007 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGR01000019.1 Salmonella enterica strain BCW_5905 NODE_19_length_94034_cov_3.21368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93796 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 93857 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 93918 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 93979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTATCTCTCCGTTATGTGTCGGACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //