Array 1 90673-89564 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 90672 30 100.0 36 .............................. GGAGAACCGTACCCCCTTCTGGAACGATAGATATCT 90606 30 100.0 37 .............................. TCATGTAGCTGTTACCGGGTGGTTTTGTGAACGTGAT 90539 30 100.0 36 .............................. CATTCTCCGCTCCCTCCGCTACTTTGCTAACGGCCA 90473 30 100.0 36 .............................. TCTGATAACGTCCAATTATATGATAACAACAAATAC 90407 30 100.0 38 .............................. TGAAACCAACCCAGTAATAGGGGATGGTATGTAATGGA 90339 30 100.0 36 .............................. TGAGGAACTACGCCCCGGAGATTGCCCAGACCATAG 90273 30 100.0 36 .............................. ATGGTAATCGCAAGGTTATTCAGGTTGTTCTTGAAA 90207 30 100.0 37 .............................. TAATTAAATCATACTGGTAACCGTCGAGGAACTTAAG 90140 30 100.0 37 .............................. TTCACAAGGGAGAATTGACCACACTTATGTAGAAAAG 90073 30 100.0 38 .............................. CCGGGTTTTGCGTTTTTATTCATAGTTGCCGCTGCGGC 90005 30 100.0 37 .............................. TTCATTATTTCCTCAAGGTGATGCTAAGTGAAGGAAG 89938 30 100.0 36 .............................. TCGCCTCTTCTATGCTAAGCCCGTAAACCATAGCGA 89872 30 100.0 45 .............................. CTAAAGTTTAGTCTAGCAACTGTGAACATGATGATGTTGCAATAA 89797 30 100.0 38 .............................. GTGCTAGGGAAGGTCTCTCGCTGTTACCTGTGGTAGAG 89729 30 90.0 38 ............A...A............C CTTTTGTTCTCTTTGTTGTTCGTGTCGTGCTTGCTTTT 89661 30 96.7 37 ................A............. CTGGAAGGAGCACGACCACTATAGCTGCTCCATGGAT 89594 29 90.0 0 ................A........-...C | CG [89572] ========== ====== ====== ====== ============================== ============================================= ================== 17 30 98.6 37 GTTCCAATAAGACTCTGGGAGAATTGAAAG # Left flank : AACCTTGACCTCTTAGTGATTGGGAATTTCGTCGTATCACGCTGAGAATCCTTTTTTCTAGTTTTAATTCCCTTTTAGAAGGTTACCTCTAAATTGGGGTCTTTCTGCTCCCCTGGAACTCTTTAGTAACACTTTGTTGTTATGGAACATGATGTTACAAAATTTTAGCAAATTATTACGAAATTCTTTTGGGTTATCGAAATAAGAGTGGAAAAAGCCCCATAATGGGCTATCCACATGGAATTTGTTCTTTTTCCAAATCCAGACTGTTTAAATCATGTATACTAGAATTAAAGCCCTCATCAACTCCTGGAAGTTTCACGATCAACTTCGTACACAGAAAATCCCGGATTTGCGCGGATATCCCCAAACAAACCAACACTTCTTAGGCGTCTAATCCACGCCTTCTGGCGGCTTTGTGAAGTCCCCTTCGGGGAAAGGCTTATAAGATTAAGGGCTTCTCATTCTTTTGTTGGGCAAAAGAAGGGAAAACTTACCCT # Right flank : CTTATTTGGTTCTTTCCAAGCTGTTCTTTTGGGCTTTCGGGATATGGCCTGCTTTTGGAGGAGATTCAATGTTCACCACTGCCCGACCCGTCACAAAATCGTTGTGCTGATTTCATTCATTGAGGAACTTTCCCATCCTTCGATGTCCATCTTTTCGTTGAGGTAACGTTATAAACATTGGCCCGTAGGGTCTTCGGTGATGATCATGGCGCTGAGCGACAGGCTTGAACTCGTCAACCCTTCTGAGATTAGGAAGCTCTTTGACCTCGCCGCAGGGATGGAGGGTCTCATCTCACTCGGTATTGGAGAGCCCGACTTCGACACGCCGGGGAACATCAAAGAGTATGCAAAAGAATCCCTCGACAGGGGAATGACACATTACGGCCCGAACGCAGGTTTGCCGATGCTGAGGGAAGCAGTTGCCAGAAAGTTCAAGAATCAGAACGGCATCGAGGCCGACCCAAAGACGGAGGTAATGATACTCACCGGAGCAAACCAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTGGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 190674-188385 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 190673 29 100.0 36 ............................. ACGGCTACGTGCACGCTTCAAAGACTTTCCACGCTC 190608 29 100.0 36 ............................. AAACGGGTTCGACGGGGGAGACTGACTTGGACATAA 190543 29 100.0 38 ............................. ACGTAACCGAGGGCCACTTCACCCTTCGCCGTTTCGAG 190476 29 100.0 42 ............................. CGCTGGACTGGGCGTGGCGAGATAGCATCCAGCACGGGGACA 190405 29 100.0 39 ............................. TGGCTCTTTGCTATGGCTATTTTTTGCATTGGGGGTAAT 190337 29 100.0 36 ............................. TAGTTTCTGAACACTGGGGCTTTGCTCGTTCTACGG 190272 29 100.0 40 ............................. ACTCTATAATTTCCAAACCAAAATTCTTCCTTACCCACTC 190203 29 100.0 40 ............................. GACCACCTCCGGTTTTGGGAAAGATTTTGCAATTATAAGA 190134 29 100.0 36 ............................. ACGATTTCAGCAATCAGGAGAAGGTGGTGAAAGTGG 190069 29 100.0 40 ............................. CAACTCAAACGCCCTAATCACGATGTTTGCACTCTATCAC 190000 29 100.0 36 ............................. CCCCTTGTGAAAAACCCAAAGGGGGTGTAATGTAAT 189935 29 100.0 37 ............................. GCGGCGTGGAATAACCGGGGAAAGTTCCAAAATAATG 189869 29 100.0 37 ............................. TTCTTATGGAGGCCCTCGGAGTAGGAGAGGCCTCTTC 189803 29 100.0 40 ............................. CAAATAAGCATTTTGCCACGAAAATCCAACCTATTAATGG 189734 29 100.0 36 ............................. AGGACATCTTCGAGAGGGAGGGTCTTATCCTTTACA 189669 29 100.0 37 ............................. TGGCTATCGTGAAGACGAACTCGCAAGCGATGGCCAA 189603 29 100.0 39 ............................. GAGAAGGCGGCGTCAAGCTGGCCGGTTGTTGCAGAGGAT 189535 29 100.0 35 ............................. TCCAGATTTTCGCCTGCTTGTTCGTACTGTCCCAG 189471 29 100.0 37 ............................. ACACTACCAAAGAGTACCTGAGTGTAAAAAAAGACCC 189405 29 100.0 37 ............................. ATGCCGCCGCCACGTCGGTAACTTCCTGCTCATCAAA 189339 29 100.0 38 ............................. ACGGGTTTGTTTCCCGGTTCATCAATGCCGCGGTAGCA 189272 29 100.0 40 ............................. CGGGCACAGGGTGGTAAATTGTTATTGTCACTGTCTGCCC 189203 29 100.0 35 ............................. ACAGTCCCTGTGGGAGCAGGTCATCATTGATCCAC 189139 29 100.0 43 ............................. TCAACGCGGTTATGAGCGAGTCGGTGCCTCCCTTCTTCTCCCC 189067 29 100.0 38 ............................. TGGGGTTCCGTTGCTTGTTCTTCCCTATCCCGTAACGA 189000 29 100.0 38 ............................. GCGGGGCAAGAAGCCCCCGCCGAGATACACATAAAGCT 188933 29 100.0 38 ............................. CAACCTTGGTTCACTAACTCCAGCGTCCATAGAAGTCT 188866 29 100.0 36 ............................. AGCATAACGCAATGTGGGTGCTGACGAAGCGGAAGC 188801 29 100.0 36 ............................. ATGGGGTCACGCTCCGAAGTAGGCCCCTGCCAGCGT 188736 29 100.0 37 ............................. GGAATGGTATCAACGACCTCGCCAACCGCGAAGTCGG 188670 29 100.0 35 ............................. AGGGCATTCCGGGGAAAGCTAAAGCCGCGGCGATG 188606 29 93.1 41 ...............TG............ AAAACTCCTGAAATTCCTCTTGTGTTCGTTTCTGTCCCCAC 188536 29 96.6 35 ................G............ GTGTACACCATAAAGTACCGGTTCACTTTTGCCGA 188472 29 82.8 30 ..C........G........C..A...C. AGGGGGAAGTGGGGGACGGAACGTCCCCCC 188413 29 75.9 0 .............G..G.C...C..TG.T | ========== ====== ====== ====== ============================= =========================================== ================== 35 29 98.5 38 GTTTCCGTAGAACATAATTGTGTGGAAAG # Left flank : ACGTGCTACTCTTCGATGGAGAGCCGGTTTTTGTGTTTTAAAGCTCTATTTTTCTCTCATTCACCTTTATTTATGAATTTCAATTGATTTAGAATCTATAAAGCGACATTCAACCTGTTAGAAGAGTTTTTGTTTTCTGTTTATCACCTTGTGGTAAGGATCAGACAAATAGACACATTTTGCAAAGAAAATCTAAGAAGCTCTAAACACGCCACTGGGACAAAGTTCTTTGAGTTTGAATAGTTAAGAGGCTCGAATTAATCGTGGATTTTGTTTTTAAGTGCCGGATCATGCGTAAAATCGCTAAAGTCCTCTTCGATTGCTGGAGGATTCCCCTTTGATGATTTAAAACCTGTAATAACAATTTCAGGCCTTTTTGCCGGTTCTCCATTTTTGTGTCGGGTTTATAAATAATGCGCAGTGACACAGGTTTTCATAGAAATCCTTAAATAGGAGCCTAAACAGTATTCTATTCATAAATCAAAGGAAAAAAAGTGAGG # Right flank : GTTATGAAACGGCCCGTATACATAACCCAGATGGGGGTGCTTGAGAGGAGGGGAAACACCCTTTTCCTTGAAAACGAGAATGAGAAAAAGGCGATACCCATAAACTCGACCAGCGAAATCCACTGCTTTAAACCGGTCAGTCTAACCAGTGGGGCCATGAAACTCCTCTCGGAGAAAAACGTGCCTGTGCACTTTTACAACAAGTACGGCTACTACAGGGGCTCATACATGCCGGTTGAAGGGCAGACGAGCGGGACCGTCGTTATAAAGCAGGCCGAACATTATCTTGACCCCCAAAAGAGGCTCTACGTGGCAGGGCAGTTCATAGAGGGCATAAAGGCCTCAATGGTGGCCTTCCTCAAATCCCAGAGGGCGAACTACACAAGCATCATGGAAATGGAAGTGGGGGGAACAACACCGGCAGAGCTCATGGGAGTTGAGAGCCAGCTCTGGAAGGAGTTCTACGGGATATACGCAACTCTTCTGAATCACTTCGAGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACATAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 195738-194972 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 195737 29 100.0 36 ............................. AACCTGGCTTTCTGGGAGTGTTCAGACTGAATAACT 195672 29 100.0 35 ............................. CCACAATAGCGGGAATAATCAAAAAGCTAAGAAAA 195608 29 100.0 38 ............................. ATGTATTCATGGACGTCCGGGAGTGTTTTTAGTTTCTT 195541 29 100.0 39 ............................. TTGCTCCTTTCCTGAGACGTAGCTGAAATCCCAACTTCC 195473 29 100.0 36 ............................. AGCGGGAACCCGACACAAAAAACAGCACCTAATAGC 195408 29 100.0 43 ............................. ATCCATTGGTTCGCCATTCTTCACCACCTCAATCTTCTATCGT 195336 29 100.0 37 ............................. GGGCAATCGATAGACGTGGAGGACATGCAAGCGGATT 195270 29 100.0 39 ............................. CTGTCGTCGTGGACTATTCCGATGTTGCCAGAGCTAAGA 195202 29 100.0 38 ............................. CAGTATCTATGAGAGCCCCCGTGGGAACCTAGGGGTTT 195135 29 100.0 37 ............................. AGCTCATCGTTGCCTTCTGCAATCTCCCACACCTTTT 195069 29 96.6 40 .....T....................... AGGTCATTATGTCGGGACCTCGGTCCCGGCGAACACCCAC 195000 29 79.3 0 ..............CTTC...A.C..... | ========== ====== ====== ====== ============================= =========================================== ================== 12 29 98.0 38 GTTTCCGTAGGACATAATTGTGTGGAAAG # Left flank : AGTAACACACACGAAAATAAAGGGAGTTTGACGTTTGTTCTTTACTTTTAGCGGCTTGTTCTCCCGTAGATTTTTAATTTAGGGGTCAAAACGTATATTTTTGAAATTTAACGGTGGTAAGTCGGGTTTCAATTTCTGATTACCCCCGCAGTGGTAATCTTTGACAAAATGTGTCCATTTGAGAAATAAAGCTGAAAAAGTCCTAAAAAGTGGATTGAGCAATCGTAAGGCCAGTTTAGATAGTTAAACGACCCTAAACAGCCATAGATCAAATTTTTAATCGCACTAACTTATTCAATTCTGAAAAACACGATTTCGATTGTTTGGTGTGCTCATAGAACCCGGTTCCTATTCGCAATGAAGCACAAAATGACTGAAAAAGCTCCTCTATTTTTGTGACAGGGTTATAAATGGTCTGCAGTGCTACAGGTTTTCATGGAAAGTCTTAAATAGAAGCTTAAACAGTGTCTTATTTGCCAATTAAAGGAAAAAGAGTGAGA # Right flank : CAACGCGACGTTCTGCCTTAGGAATTCCAAAAGATATTAGTAAGGTTTATAAACTTTAACAGTCAAACACATATCTGGCAGTTCGTGCTGTCCGGTGAAAATTATGCGACTAAAATTGTCATTAATACCCCAAAATGGCAAATTTTCCCGCCCAAACAAGCACGCAGTTCAGGGCTTTATTTACCACATGCTGAAGGGAACCGAGTACGGGCAGAGACACGATCAGCCCAAGTTCAAGTTTTTCACGTTCTCAGACTTCTTTGTGGACAGAGAAGGGAAGGCGACGTTTTTGGTTTCTTCGCCGGATTCGGGTTTTATTCGAGCCCTTCAGTCTGCGGTTAAGGAAAGGGAAAGTGTCTACATAGGAAATGACGAGTACAGGGTAGTGGAGATCAAAAAGTTCAAGCTCCCACTCCGAAACAGGTTCCAGACGGGTTCGCCAATTGTAATCTACAGGAACTCCGAAGAGGACGAGTACTTCAAGCTCCATGCCCACAGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACATAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 208451-207211 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 208450 30 100.0 37 .............................. TCATCAAGCGCTCGGCAAGGCGTACAAGCGCTACGGG 208383 30 100.0 37 .............................. TTGAAGGTGAGTTTCGCTATGTAGCTCATTCTCCCAC 208316 30 100.0 36 .............................. GTTTGAGCTCCTCGATAAATCATTCAAAATGATAGT 208250 30 100.0 38 .............................. TATTAGCCCTGGTGGTGAAAATGGGCTTTTTGTCCAAG 208182 30 100.0 36 .............................. TGAAGTAGTCCTCCATAAGCTTCTTTTGTTCGATGA 208116 30 100.0 38 .............................. GCTTTTTGCGGACGATTGGTAGAACTGGCGCCTCTTTC 208048 30 100.0 40 .............................. GCTCAAAGGCTCACAAAGATGAGCATGGCGGGGGCTTCAG 207978 30 100.0 37 .............................. GCCTGGTCGCGGATGGCTGAGGCCGGGGACGTGTCGT 207911 30 100.0 35 .............................. GGGCTGACGGTGAGGACGTAGAGCCCGGCTCCCGC 207846 30 100.0 37 .............................. CCGCGTCTATATACTCAGGGCTAAGGGAGCTTCCGAC 207779 30 100.0 37 .............................. AGAAGTACTGCGACGTTTTCGGCGCTGACAGGGTTAA 207712 30 100.0 35 .............................. GCATGACATAGAAGCGTCTTTTAGTGGGTGCACCG 207647 30 100.0 37 .............................. CTGGCCGACCTGTATCTTTATGCCGTCGACCTGCGCG 207580 30 100.0 37 .............................. GTGGAGTTGTTGAGGCATTTCTACTGTCGTCACGATC 207513 30 100.0 39 .............................. CTTGTCTATCTCCCGCGCCATCTCGTCGAGCTCGGCCTC 207444 30 100.0 38 .............................. TGGGATTACCTCCAGCACCCCATAAGAACTTGCACTCG 207376 30 100.0 37 .............................. TTTCCTGTGAGGATGATAGTGGCGGTGTTGTTTTCTA 207309 30 100.0 39 .............................. GGGACGATAGGGAACGGGAAAATAAAAGACTTTTGTAAC 207240 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.8 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CTACAGTTCGATAATTTTATAGTTTTTGGCTCGTATCACGTTTAAATCCTTTTGTTGTTCAAACAGGATTTTAATAAGCAATTAATCTAGAAAATACCTGTTAATTAACCCTAGGAAGTCTTTAATAACCTTTAGTTACTATCTAACAAAAAGTTGTTTTTATAGATAAAATTATGACGAAATTTTTTCAAAATTCTGAACAGAGGCGTATGGAGGCTTCTTTAATGCTCGTCCCCAGTGCAAATTGAGTATTTTTGTGCGAAAAGGCATAAAAGCAGATCAACCTGTGTTTAAAGCTCTTTAAACGTTCCGGAAGTCTCACGTATATAGTTATACCCTGACTCAAGGGAAGGGCAAGGAGGAGGTATTGGATAGAAACTTACTTCAGAACCCTGGATTGAAGGCTTCTAGGGGCTTTTTAAAGTACCCTTTGAGGAAAAGCTTATAAACTTCGACCGCTCTTGTTAGTTCAGAGGGCAAACTAGGGGAGAATTCGCCCT # Right flank : GTACAGACAATCCTCGTCTTTCTTTTCCGTCAGTTTGAAAGCGAGAAAAATTAAAAATCACTTTACTTTTTTCTCTTGAAAGCCTCGCCCTTCAGAGCGGGGAGGAGGTCAGCACCCCCTCAACCAGACGCCTCTCAATGAGCCCTAAATGGAAAGAACGAAACGATGGTACCGCATAAGGGGTTTTATAGGAGTTCTATGACTTTCCCCGCGTGGAGTTTCTCAAAGTCCTCACCGAACTCGCTAGCGAAGAGAGCTTCCGCTTTGAGGCCGGTGCAGTGGCCGGCGTAGACCTTTTTAACTCCAATTCCCTTCAAGGCCACAACAGTCTTTTGAATCCTCTCCTCATTGGCATCTATCAGATGGAAACCGCCGACAACTGCATGAACGCTCTCAACCCCGCTTATCTCCCTTGCCTTCTGCGCCATGCTGACTATTCCCGGATGAGAGCAGCCTCCTACCACGACAAGGCCTTTTCTGGTGTTTATCGCGAGTCCTAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 5 329028-328625 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 329027 29 100.0 46 ............................. AACCTGCCAAAACACTTCATGTTTGTCCCTCCGAAAACATCGTCGT 328952 29 100.0 48 ............................. TTTATAAGTTTCCCCATATGTCTCATCTTCCTACCTCCAGATTTTTTC 328875 29 100.0 42 ............................. GCGTCGTTGTGGCAGATTATCCTATATTTATCATATTTTGTC 328804 29 100.0 44 ............................. CAGAGCGGCATGCCGAACTGTAGGATGTAGTACCATGTTTTGAA 328731 29 100.0 49 ............................. CCTGAGGTTTGTTTCCTCTATTCCCTGTCGTATTTTCCTTATGTTTCAG 328653 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================================= ================== 6 29 99.4 46 GTTGTTTCAGAACTATGATGTGTGGAAAC # Left flank : GATATGCTATGCCATACCCCTGATAACAAAAATAACTGGCGAGAGGACTTTTCAATTTTACAATTTTTAAACGTAATTAGTTGAACTTTGGAAATTAAAGTCGGCTGTTTTCTCTTTTTCAAAGGGAAAAGGACTCTACAAGGCTTTAAATTTCAAAAAGGCCAAAATCCAACTATTTCCTGAGGGCGTTAATTCGGGGCATTCTAACGGTTCCTCCGACAGAACAGGGGACGTTCCCGGAAGATACGTGGAGTGATTTCCGGGTACTGTCCTTCTTCAGCGCGACAAAACGGGGATCTGCCCTGCAGTTACCGTCCATCGTTCTGGCTTCCCCTACCGAGCCCTAAAAGCCCTGAGGTTCCCCAAGTTAAGGGGTTACTATGGCCGATGATTCCATAGAAGAGCCCCGTGACCATAACTTTCCGACCGTCAAAGGAGCGAAAAGCTTATAAGAAGTTCTTACAATAACGTATATGTCCAAAGGGACAAAAAAGTGAACC # Right flank : GTACCTACTGGTGTGGGTATACCTCAATTTGCAGTTCTTATTTTTCCGGGCCGGCTTGGTTTGGAAGGCCGATGTTTCAGGAATCCAAACGTTTTTAAGATGGTGTTTGAGAGTGCGATACTGCAAGGCTACCCCCTCTGGGGTACTTGTAAAAGTTTGGAACGTGATGCATATGCTCGCGGAGCGTGTTGGGGATTTTCTGTACCGCGTGGGTGAAGCCGCTGAGGGGTTACCGTACCTGCTCGACTTCCTCGGGGAGAAGCTCACCCTCAACCTGAAGATGGCCGGCATCCTCGCAGTCCTCCTGATACCCCCGGTTTACGTCTCCCTCGGTCTCATTGCGGCTGGCGTCGTGAACGGCTTCATCACCGCCCTTCTCCTCTACAACACGGGCACCGTTGAGAAGGCCAGCGGGGCCGCCGGCATCGTGCCGTTTGTGGTCGCGGGCTTCTTCCTGGCGCACTGGTACTACGTCTTTGAAATGGTCGCGCTCGTCGCTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTCAGAACTATGATGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 6 333316-333691 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 333316 29 93.1 44 G.....T...................... GGAACTGGAGGAGCTCCTCAAGCCCGATCTCTCCCACAGCTTAC 333389 29 100.0 40 ............................. GAAGATCAGGGAACCACCAAGGAAATCCCCGTGCTCGCCA 333458 29 100.0 39 ............................. CGGTAGCGTCAAGGAAATCCCCGTGCTCGCCATAGAGCT 333526 29 100.0 39 ............................. TGGCGCCGGAAAAAGCACCCTCGCGAAGAAGGTTGTGAA 333594 29 100.0 40 ............................. GGGGTTTGCCAAACCAAGGACACCTCGTACATGGGAGGCA 333663 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 6 29 98.9 41 ATTTTCCAGACCGAGGGTAGCTCGGAAAC # Left flank : GAAAGTATCTAAGGGTTTAGGGCTTTCATCCCCTCCCTTTCGGAAGGGGACTTCCCGCCAGAATAGGTTAAAATTCGGGACATCAACGTGCACCAACATTATGACGGAGAATGAACTTTGGGGCCCTGTTTTGTTGTGCAGTTTTTCCACTGAATCTTTCATTACCGCCTATAGTTCAAAGGTTCCTCTTCGTCGGAGCCCTACCCCCCGAACGAACCCTTTTTGCACTTCCCTTTTCAGGTGGGGGGTGAAGGCAGAACACCCGCAGCACGGATCCCTTCAGAAGACCTGAAGCTGCCGACCTCTTTCCCGGCAGGCCCCACCGGGACGGGCAGAGGGGCCCAGGAACTTTAGAAAATGTAAAACAAATTGTTCACATAGAAAAGGGGATACGAGGAAAAGCCCCCGGAAACGCGGAATACTCTTTCTTCACGCCTTGCTTTGGCAGTTCTGAAACCATTCTCCCATTTAAGTGATACACTTGAGTATGTGGTGTCCAT # Right flank : CGGTTAACTTTTTTGCCCCGCTGGGCAGGTAAAGTGACGAACTCATTCCTTATAAGTATTTCGGTTCTCTGACGGCGTGGAAAATAGGGCACAGGAGGGCTTTTTTCGTATTAACTTCCATAGTAAAAACGCCATCTGGGATTGGGTGACCCTTCTTCTTTGGAACCGCCTTCCGGAAATCGTCCTTGGATCCAATGGAGGATTTTTAACGCTCTTAACCAAGAATTGGCCTTTTTCCTCGGAAATTGTTCCACGTATATTCTTTGAAAACGCCCCGTTAGCCCAAAGAAGCCGGGAGAGGCCCCCGATCGGAGGCGAAATAGAAATAGTTGGATTCTCGCCTTTTTACAAAAAACGGTGTTATTCTAACCGATTTTGGTTGGAAAGTCAGTTTCCCCGGACTTTGATTTTCGAAGTACGAATTTTAACTTCTCAACATTGTAAAATGGAAAGGCGCGTGGAGGCCCTAAAACTCAAAAAGGAAAGATTTCATTGGAGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCCAGACCGAGGGTAGCTCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 7 344618-344079 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 344617 28 100.0 45 ............................ TTCGTTGAAGATATCGGCGAACTCGAAAGAAATACCGTGCTCCGT 344544 28 100.0 45 ............................ TTGCGTTGATGTAGTTCAGTAAGTACTGCTCCACAACAACCTTTG 344471 28 100.0 42 ............................ TTCATCTCATCCACCTTGCTTATCCTTTTCTCTTCATTCCCC 344401 28 100.0 47 ............................ CCTGAAACCTCGCGTAGGAGTTTTATGAATATTCCGGCGGAGGGGAA 344326 28 100.0 47 ............................ CTTTCTTCGTAGCGCGGGTCTGATTCAAGCGCCCGCACTACTGTTGT 344251 28 100.0 43 ............................ CCTCTTCATCGACGATGGATGGTATGTCTATGGTCTCGATGTA 344180 28 100.0 46 ............................ CACCCTCTACGTGCGCGGGTAATGCGAGCGGGTTGATTTTTCTCGC 344106 28 96.4 0 ........................G... | ========== ====== ====== ====== ============================ =============================================== ================== 8 28 99.5 45 GTTTCAGAATCGCCAAAGACTTGGAAAA # Left flank : CTGAAAGAGGTTGCAGAAGAGTATGGTATTCAAGTTCTGGTGGTTAATGAGGCTTTCACTTCGAAGGCTTGTCCCGTTTGCGGGAAGCCTCACAAGGGGGCTCGTTTTGTTCGTGGATTATTTAAGTGTCCCGAAACGGGGCTTATCTTCAACGCTGACCTTGTTGGAGCTTTCAATATCCTGAAGAAGGTGGTGAAAACCATAACCCCGAACTTGGGCGGTTTGTATGCCCAAGGGAGGGGTAACTGGGGGAAGACCCTCCCGGAGGGGTCGAAGACCCAACTGAAGTTCGGGCTTAATGAGACCCCTCAAACCTCTCCGTCAATGGCGAGGGGTTAACTCGTTGGAACCCTCGCCGTTCACGGCGGGGAGGAGGTCAGCATCACGGTTGGTACCAGAACGGGGGTCACGCGCCCAGTTTTTCCGGCGGGCAGGGAATCAAAAGCTTATAAGGAATGAGCTCGTTACTTTATCTGCCCAACGGGGCAAAAAAGTTAACC # Right flank : CTGAAAAAGTCAAGTGGCTGTTTCTGTTTGGGCTTTAATTCTGATGGGGAATTTTGTTCTGGAAACCTCCTAGAGTTTATGTCTAATTTTTTGGCTTATGTTCCGACTCTGGCTGCACCATAAGCATAAAGATAGATACGAAAAGCTTTTATAATTTGGCTTCCCTCATTTGACACTGGTGAGCATAACCATGCATCATAGAACTCCACCGGTCTGTTCTCACGGGAGGGATACGGATGTATGAGGCCATCTTTGAGCTTGAAGCCATAACGCCCCTCTTCATGCGCGGTGCCGACCAGAGAAAAGCCGAGTTCCGCTCGGCCAGTGTTAAGGGAGTGATGCGCTGGTGGTTCCGGGCTCTGGCCGGGAACTACTTTGGAAACAACATCAAGGCACTTAGGGAAGCGGAGGGAAAGGTTTTCGGCTCCGCAGGTAGTGGTGAGGCTAAGAAGAGCAGGGTCTTTGTTCGGGCTGAGGTTAAAGATAAGAGGGAGGGGAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAATCGCCAAAGACTTGGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 8 349527-348449 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUR01000001.1 Thermococcus sp. Bubb.Bath strain BUBBLE BATH NODE_1_length_906307_cov_34.661901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================== ================== 349526 31 100.0 42 ............................... TCAAAGATCGAAAAATTTGACTTCGAGACGATGACACGAATT 349453 31 100.0 52 ............................... TTCTGCTATAATAGGGACCCTCACTATAAACGTTTGCAGAGTGTTGTTTCAG 349370 31 100.0 50 ............................... TTGTGCCTGCGCCTGTTCATGCTGTAAAGTTCCTTTATTGGCGAAAAGAG 349289 31 100.0 42 ............................... GTAATAGTACCAACCACCGTACCCGAAACCGGCGCGGCAAAA 349216 31 100.0 38 ............................... CATCGACCCCGGCGAGTCACATATATAATACACGTGGA 349147 31 100.0 51 ............................... CCGTGGACCTCGACCTCATTTATTGTGACCCATCTACCCTCCATTTTTTGA 349065 31 100.0 44 ............................... TTCCAACCGTTATAAATTTTGTCACTTTTTTCACCTCCTTTTTC 348990 31 100.0 51 ............................... CCGTGGACCTCGACCTCATTTATTGTGACCCATCTACCCTCCATTTTTTGA 348908 31 100.0 44 ............................... TTCCAACCGTTATAAATTTTGTCACTTTTTTCACCTCCTTTTTC 348833 31 100.0 39 ............................... ATCATAAAGTATTTCCCTGTCCTCTTCTGTGATTTGAGT 348763 31 100.0 38 ............................... AGCCGCATTTACGGTCAGAGCATTCAAGTAGACTGGCT 348694 31 93.5 41 ............................TG. AAATCAGACTTCGCGGGAATTTCCATCTCAACCACCTCGTG 348622 31 93.5 40 ............................TG. AACGCTTTTCACACCCCGAAACCACGAGCTTCGTACTCTT 348551 31 100.0 41 ............................... ACTGTCGTGTATTGTTATTGTACCGAGCTCGGTGTTTATCT 348479 31 90.3 0 ..........................G.TT. | ========== ====== ====== ====== =============================== ==================================================== ================== 15 31 98.5 44 GTTTCAGAACCAGCTTTACAGCTCTGAGAAC # Left flank : GATACCCGCTGAAAATTCCTTGATGGACTTACAGGGGAAGCTCCGCGCTTTTCAATTTTGCAATTTTAAAACGTAAAAATCCAAATTTCAAAATAAAAAGTCGCATGAACGGGCTTATCTCCACTAAAACAGGCATTAGAATATTCCTAAATCCAAAAAGGACAAAATCCAACTACTTAGAAACGGCCCTCTGTTGGAGCCAGTGCTGCCCTCTCTTAAGCCAACGGAGGGGTTTTACGGGAGATACGTGGAGTAATTTTTTATGAGAAGCCTTAAATACCATTATGGTCTTCTCTCCACATTTTAAGTCGCAGGGTAACATTTCAAGGAGGAGAACCCCCTGATTAGAGGACCTGAATGCCCCCAACGTCCCGCTTACTATTGAAGATAATACCAGCAAAGCCCCCATAACACCCTCTTTTTAAGGCTCTAAGGAACCAAAAAGCTTATAAAAAGACAGTTCCTTATCCCTTCTGTCCATACAGGTGAAAAAGTGAACC # Right flank : TGTAATCTTGATGTTGAGGGCGGGATAAAGGCGGCGTGCACTTTTCTCAAGTTGTAGATGGGGCAAACTCTTAGAATCGAAGGGGAGCCCGGAGGGGAGTGTTCTTAGTTGTTGAGAAAAACGGGAAAAATAGAAAGGGATCACTTCGAGGCGGCAATGAGCCTGGCCTGTTCCATCATAAGCCTGCATTTCTTCTTCTCCTTGAAATAGTAGCCAGCCGTACCAGCCAGAATGAACAGGCCAAGGAGCACTGGTATCGTTGCAACGCCGAGTACGACGAGGACGATCATGGCGATCTTCTCAGGAACTGAAAAGCAGGAGATTCCCTTCTCCGCCTTTTTTCCCGTGGACTTAACATCCGTATCTCCGGCCATCCTTCCGATCACCGGGTTTCAGAACCAGCTTTACAGCTTTGGAAACAAACGCCCTGATGACCTGTCCGAGCGGTAACCCGGACTGGAAAACAGGAGGTTGGGGTGTCTCAAGGGGGCTTCACCGCC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCAGCTTTACAGCTCTGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //