Array 1 77909-77460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHS01000017.1 Erwinia piriflorinigrans CFBP 5888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77908 28 100.0 33 ............................ CTGCAATCAGGGCTAACATTGCAGCGCTAAGTT 77847 28 100.0 32 ............................ AATTCAACGAACAACCCGTGGGCGATGATGGA 77787 28 100.0 32 ............................ TTTCCGTGGAATGCACCACGCCCGGCCATTAA 77727 28 100.0 32 ............................ CTCGACATCCACGCGGCGGGTGAAACGGCCGT 77667 28 100.0 32 ............................ CACGGCACAGCAATCTGGCGTACCGCCTGCAC 77607 28 96.4 32 ..........................G. CATTTGCGAAAAGATGCCGCTGGACATTTGAT 77547 28 92.9 32 ........................A..A GGGAAATAGCGTGGAATAGTTACGAAATCGAC 77487 27 82.1 0 ........T..T.......A....-..T | T [77467] ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : GATTTACATGCCTTGCAGCACAGCGGTTGGGACAGGGGGTTAACCGATTATATCTCCTGTACCGATATCGCCCCGGTTCCACCGCAAGCCGTGTGGCGCAGCGTGCGGCGTGTACAGGTTAAAAGCAGTGCTGAACGCCTGCGCCGCCGCTCGGTCAATAAGGGCTGGCTCAACGAAGCGCAGGCCGCAGAGCGGATCAGCGTGGTTAACGAGCAGCGCAGCGATTTACCCTATTTGCAGATAAAGAGTGGTTCAAATGGTCACGCCTGGCGGCTGTTTATTGAGCATGGCCCGCTGCTGTCCGCCCGCTGCGAGGGCAGCTTTAGCTCCTACGGGCTAAGTGCCACGGCCACCGTGCCCTGGTTTTAACCCTTTTTTTTTTCCGCTAACGCTAACCTGTTGATTTCAGGTGGCGTTAGCGGTAAGTGGTAAAAAAGGGTTTTAAAGCGGATTCAGGGTTTTTAGCTTGTTTTATAGCGGGTTAGTTTGTATTACTAACG # Right flank : CCATAGCCATCTACAGTAGTCGCACTGACTGCTGCACTGCTTTGGCACTTAACGATCGTAGCGGATGGTGCAGAAAACAGGATAGGAAATTGTTGCGGTCCGTCGCTGAAATAGCGCTTAATTAAGAACAGGTTATAAAGTGTAGCGAAGAGTGATATTTATAATTTATTTATGAAATTAAGTCCCTGGTATGACGATGTATAATTTGTCTTCTCTAAACTGATATAGATATTATTACTAAAAAAAGAGGGGTGTTACCCTTAAAAACCACCCTTGATAAAATTTCTAATTAATGATAATAGCTTGTCGCTTTCTGTTACCCCATTCTCGCTCTGTTTATCGATATTTCAATAAGTTAAACTAATGATAGTGATGAGTGCCAGAGCGTAGAAAAGAACTGCTTGAGATCCCTTAAATCAAGGCGTAACCTCCTCCGAAGATGAAAAAAACACCGTATCTGACGGTTACAGAGAGGAAATTATGGATAAGGGGAGTAACTA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89586-88601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHS01000017.1 Erwinia piriflorinigrans CFBP 5888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89585 28 100.0 32 ............................ CGGAGAAACGCCGTTAAAGGTGGTGACCTCTC 89525 28 100.0 32 ............................ ATCGATCTGATTGCTACCGACCCGCCGTACTA 89465 28 100.0 32 ............................ TTCCAGTGTGTGTTGCTGAGGCAGCAATAAAG 89405 28 100.0 32 ............................ AGTGGCATACATAACAAACGACCGTAGGCATT 89345 28 100.0 32 ............................ CACCACCACCGGAAAAAGCGCCATCAAAAAGC 89285 28 100.0 32 ............................ CTGAAATTGAAGCAAGATATAAGTACATTTAT 89225 28 100.0 32 ............................ ATGGGGATCGGGGTGGTGCTTTAGCCAGCAAA 89165 28 100.0 32 ............................ TTGGAGAAATGCCGGTTTTGGTCGGTAGCCGT 89105 28 100.0 32 ............................ TCATTGTGTGGCTGTAGTGCTGGAGTAATCGA 89045 28 100.0 32 ............................ ACCCGGAGAATCCAGGCATCTGATACCCACCA 88985 28 100.0 32 ............................ CTGTAGAAATGGATGGGTTTATTTTTGCCAAC 88925 28 100.0 32 ............................ TATTCTGCTCGGTGGGTAACCCTCTGCCATTT 88865 28 100.0 32 ............................ CGGCTGTTCCGGCCTTAACCACAACGTAACTT 88805 28 100.0 32 ............................ ACTACCTGTGGATATGCTACGCAATCGCGTGG 88745 28 96.4 32 .G.......................... TACCGAAATGTAGTGAGCAACAAGTGGAACCC 88685 28 92.9 29 ........................A..A ACTCCGCTATTGATGCAAAATCCATTATC 88628 28 78.6 0 .......A.............GC.TGT. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAG # Left flank : CGTTTGATATGAATAAACCGTCGTTTGAAGTCAGGCAGGGCGTGTATGAGAAGTGGACGATCTCGGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGCACCCAGTTCCGCATTCTGTCGGAGAACGGCAAGCCTCCTGCCGCGCACCGCAGCGGCTGGAAAGATACGGTGCGTGTCGAAGGGGGCCGCAGCGAGGTGTTGCTGCGTTTTAACCATCAGGCCGACAAAGCGAATGCCTACATGGCCCACTGTCATCTGCTGGAACACGAAGATACCGGGATGATGTTGGGCTTTACCGTGGCGTGATAAAAGTGGGCGGTTGCTACCGGGGGAATTGCCGGGGAATGGTTAACGCCCGGCGGACCCTTTTTTTTCGCTCGTATTCAACTTATTGATTTATATAGCGAGATTATCAGGGAGAAAAAAAGGGTTTAGCACAGTGAAAGTGGGAAAAAGTGAATGCGCTAAGCAGGTTAGCGTTGTAGAGTAACG # Right flank : CCCCCCTGATATTATTTGGAGCAGAGCGACAGCAGGAACCGTTTCCAGTGTTATCGTTAACAAGCGGTTGAAAACAGCATTAACCAAGTATAAGTTTGAGGATCTACGTTTTGGAGTACAGGAGGGTTTCTGGACCGAAAAATATATATACCATTCCAGCAATCAATATTTGGCCGTGGAAGGCAATATAAAAAACTATTCTAACCCCCCCCTCTGGACTCCCGTGTATTTTAAAGGAAATTACAGGCCTATTGTTCCTGTTATTTACTCTGTAGGCTAAGAGTTACAGGATATAGCTTTTCAGCAACTGTACCCTACTCCCATACCTTTCTGTTCACATAAGGTCGCGTACCCCCATCCCCACCATGAGGGATCATGATCAATGGCCCCCTGCACCAAATGATTTGCGCTATACCCAGCCCCGGCAATAGCCGCACCACCTATGGCACCAGGACCAGCACCAATGCCACCTAAGGCCGCACCGGTCAGTGCGCCTGTTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //