Array 1 6554-7445 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMA01000031.1 Prevotella intermedia strain WW414 NODE_31_length_8047_cov_10.4679_ID_17037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6554 36 100.0 29 .................................... TCGTAAAAGGTACAGCCAAACTGAATGGG 6619 36 100.0 30 .................................... TACATTAGATGTAATTTGCTCATCATTAAA 6685 36 100.0 30 .................................... GAAGATGTTGTTGTGGTTGACGACCACGCA 6751 36 100.0 30 .................................... GGTCAAATATCACATCATTTGGGTTATTCA 6817 36 100.0 30 .................................... ATTGAGAAAATTCGATTTCGTTATGAGTTA 6883 36 100.0 30 .................................... CCCAGTGTACTTTATAAGGAGAAAATTCTG 6949 36 100.0 30 .................................... AATGTATAAGGTATATGTAAATATGAACCC 7015 36 100.0 30 .................................... ACTGTTTTTGTTAAGTCGTAATCTTTATAA 7081 36 100.0 30 .................................... TGTGCGTAATGAGATACAGGCTTGCGCCGA 7147 36 100.0 30 .................................... TACTTTTTGAACGTAAACTTTGTGTCCCGC 7213 36 100.0 30 .................................... TCGTATTCGATAGTATCGACGCAGAAACGA 7279 36 100.0 29 .................................... CCCTTTGTAGTACTCGTCCGTGCAGACAA 7344 36 100.0 30 .................................... ACATCCGAAGTTTTTTCCAATTTCTGACAG 7410 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATAATGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATACGTAAAATGGGTGGTGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGGGAGTAGAAAACGGAAGGGGAAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGTTTCGGACGGCAGCACAATGGTGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCAGTTGTGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCGTATCGTTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 20383-18874 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMA01000009.1 Prevotella intermedia strain WW414 NODE_9_length_90402_cov_13.944_ID_16993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 20382 47 100.0 30 ............................................... TTACTTCCATACAGATGATGGTGAGAAAGC 20305 47 100.0 29 ............................................... GATAAAAAGATAGAAGAAGTTCCTGTAGT 20229 47 100.0 30 ............................................... AAATTTTACCAATTAATAAAATAAACGTTT 20152 47 100.0 30 ............................................... CCATTTGCCGTTTATCCAAAGATAACTTTT 20075 47 100.0 29 ............................................... ATACACATTAAAATCATAAACATATTTTT 19999 47 100.0 30 ............................................... TTGTTAGTGATTTTGTTGTTTGTTACTTGT 19922 47 100.0 30 ............................................... TTTTAAAGGCTCTTTTTTCTTTATGCATTC 19845 47 100.0 29 ............................................... CGGTGCGTCTTCCAACATGGTAACTTTTT 19769 47 100.0 30 ............................................... CAAAATAATATGATAAAAGAACAATTTCTC 19692 47 100.0 30 ............................................... ATGCGCAATCGTTTCGATTTCCCTAACGCA 19615 47 100.0 31 ............................................... CTACGATAGAATTAATTAACTCTGGTGTCAA 19537 47 100.0 30 ............................................... TAAGATGTTGCAATTACTTTCTTTATTTGT 19460 47 100.0 30 ............................................... GGATACCATATTTCTGATAAGGCTTTAGCT 19383 47 100.0 30 ............................................... CTTTTCGAGTTCTTTTTGCACTAAGTCGGC 19306 47 100.0 30 ............................................... CCATTTAATCAAGTAATCGCTTTTTGGCAT 19229 47 100.0 30 ............................................... CACCAGCTCGGCACGTACCTGCTTTATGTT 19152 47 100.0 31 ............................................... AAAACGAGCCGTCCACCGTTGCAGCAACAAA 19074 47 100.0 30 ............................................... TTATACTATTTTCCATTGTTACTATTTATT 18997 47 100.0 30 ............................................... CCAACAGCTTCACTTTCAACTCGTGCAGGG 18920 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : AGTAACTTTGATGACTTTTGGGAATATGGTAAATTAGTGTTTAATACGTTAATCTTTTTAGAGCGTTATCTCTATTTGAACATTACAAATTCTTTGCGAAAAGGTATTAACATAAACTTTCTTAAAGATTATTCTACTCAAGGTTTATATAGAAGAATGGCTACAAAAGTAGGTTGAGCTGTATTATCAACGCTATGCCTGTCGCCTAAAATAAAACGTAGTTTCTATGAACGATAATATTACTTGAAACACCTTACAGTATACAGCTACTACCGACCATCCATGTTGAGGCGAATAGTCGAAGTAACTGTATTGGAACACTAATCTATATTTCAAGATGTATTAAAGTAATTGTTCATAGAAAACTACGTTTTCTTTACTTATAGCAGGTAAGAAGAGTAAGCTGATGAGATTTAACAAATATTGCAAAAAAAACAGCTGTCTGAATTGTACAATTATAAAAGTAGGGGTAGTATTATATATAATCACCTAAACAAATT # Right flank : TCAAATAGCTTAAAGCAATGAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGTTCTAACTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGTACTTCCATATTTTCTTTACTACCACAATGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTATATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCGGGATAAACCATTCTTCTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //