Array 1 224304-226834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000002.1 Clostridioides difficile strain BfR-CL-00674 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 224304 29 100.0 37 ............................. TATATAGGTTCAGTTTCATAGAATTACTTATACATAG 224370 29 100.0 38 ............................. TCAGATAGACAAAAGGTTTATGAATATATAATTAATAG 224437 29 100.0 37 ............................. CAAACATAATAGTGCAAGTATAAAGAAAAATAAATCT 224503 29 100.0 37 ............................. AAAAATTTTATACACCGTTCGCTATTTCTTTAACTAC 224569 29 100.0 37 ............................. TAGATTTTTTCACAAATAAACTTAACGAGTACAATGA 224635 29 100.0 37 ............................. GTACCCCCAAAACAGGAGCCGGAACAGGTAATCAACC 224701 29 100.0 37 ............................. TCTAAAATCTTAACTTTTTCTTTTTCTAAATCTTTGT 224767 29 100.0 36 ............................. CGAGTTGGCCAAGCATTTTTCGCAGATTTTAATATG 224832 29 100.0 37 ............................. TCTTCAACAGTTGCGTTACCATCTCCTACACGTACAG 224898 29 100.0 36 ............................. AGGATATTTCAATCAAAAATTGTTTTTTCAAATATC 224963 29 100.0 36 ............................. TCGGCTTTAAGTGGTTACTAACGCATTCTCCATATG 225028 29 100.0 36 ............................. AAAAAGATTTCGAATCTATAGACTTAACAAAAACTA 225093 29 100.0 35 ............................. TATAAAAAGTCACTATTTCAGTCTCTTTACTCTGC 225157 29 100.0 36 ............................. GGAGTTCCACTATAAAAATATATCATAAAATAACCT 225222 29 100.0 37 ............................. AATTTTAGACAAGTGCAAGGAGAAAATGTAAATTATA 225288 29 100.0 39 ............................. TCGTGAAATAACAATTATCGGGAATATGAGAAGTTTCTG 225356 29 100.0 39 ............................. ACTAAACACTTGGTATTAGCCAACTGCATATACATATAT 225424 29 100.0 36 ............................. ACTTTCTATTTCATTTGCCTTGTCTCGTAGTGCTTG 225489 29 100.0 38 ............................. TTGCTACAACGATATAGATTAAATTTAGGAGGATACAT 225556 29 100.0 37 ............................. TGTTTTGTTTCCTCGTCTTGTTCTTCTATGTTTTCTA 225622 29 100.0 36 ............................. CAAATTCATAGCTCCATCACCATGTTTGATTTTTGT 225687 29 100.0 38 ............................. GGAAATATAATTCAGACTGTTGCTGTTCCAAAAAATAA 225754 29 100.0 37 ............................. CAAGTTCAAACACTAACATTGACGCACTTATGGAAGC 225820 29 100.0 38 ............................. AAAGTTGAAAGCCACATCATAGTCACGTATATTTTCTT 225887 29 100.0 36 ............................. TTGAGAGCCTTTACTAAACATAATATTTGTAATATT 225952 29 100.0 37 ............................. AATAATTCATTAGGAGAACACTTAAGAGCCATGCAAA 226018 29 100.0 37 ............................. TGTACAGTATGAAAAAGAGGCTCTAGGTTTAGTTTTT 226084 29 100.0 38 ............................. GTATAATTTTTAAAGAGGACATACAAACCCTCTTAAGG 226151 29 100.0 36 ............................. TATAAATAAATAAACAGAAACCAAAATCAAATCTTT 226216 29 100.0 35 ............................. ATAACATAAAGAGCAGCAACTAAAATTAGCAACTG 226280 29 100.0 36 ............................. GCCAAACCAACTATCAAATTGAAAAGTTCAGCAGAA 226345 29 100.0 36 ............................. TATCTTTTTGTTCATTTTTTATTCCTTCTGAATTGT 226410 29 100.0 37 ............................. CTGTTATAGACAAAAACACTCTTACAATAGAAAAACT 226476 29 100.0 38 ............................. TTCATAAATTAATCTATTACATTGTATCCTTTCAAAAG 226543 29 100.0 37 ............................. GACGTTTTTGATGACAAGCAAAATTCTGTAAAATATG 226609 29 100.0 35 ............................. AGCGTTAACATTAAATAAATGGGTATAGCTAAATC 226673 29 100.0 37 ............................. CTTGGTAAATCATAAGGAGGATTATTTTCTCCAACGA 226739 29 100.0 38 ............................. TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 226806 29 89.7 0 ...................T..GA..... | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGGAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATAATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTATTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATACTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAACAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACAATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 277722-277945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000002.1 Clostridioides difficile strain BfR-CL-00674 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 277722 29 100.0 35 ............................. TTTTCTAACTTCATTTTTTAAGTCCTCAATTCTTG 277786 29 100.0 37 ............................. TTACACAATGTTTCTAAATTAATCATCTTTAAATCCC 277852 29 100.0 36 ............................. ATTACTCAACTTGTAAGTCAATAAAATAAGCCCAAA 277917 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TTAAGAGTAAAGTTATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGCATTGAGAATATATAATAAGTATTATCAATTGCACTATTGCGCGTTCACTGTAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAAAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 84119-83760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000003.1 Clostridioides difficile strain BfR-CL-00674 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 84118 29 100.0 36 ............................. AAGAAGTCAAAGTATTGAAATTTACACAATTCTCGT 84053 29 100.0 37 ............................. CACTCTTAAGTTGTGACCTATCTGATATATGATTAAA 83987 29 100.0 37 ............................. TCAGAATTAACTAATGTGAATTTTTTAGACATGTCAT 83921 29 100.0 37 ............................. GTCTCATAATCTACATATTCATCATAATTCTTTTTAA 83855 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAT 83788 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGA # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAAACAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACATATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 192809-192453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000003.1 Clostridioides difficile strain BfR-CL-00674 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 192808 29 100.0 36 ............................. GATAAAAGTTCTTTTCTTACTCTTACTTTTAAAGAA 192743 29 100.0 36 ............................. GTAATTCCTCGGCTTTCTTTTTTAGATTGCATAATT 192678 29 100.0 36 ............................. GTTATAGTCTTTTGGATAACTACCCAATTAGGATTT 192613 29 100.0 37 ............................. GCATATGTATATATCATTGAAATAAGTTTTAAATGTC 192547 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 192481 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 93.7 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTGTTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACGTAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7748-7151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000020.1 Clostridioides difficile strain BfR-CL-00674 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================ ================== 7747 29 86.2 36 GA.............A............G GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 7682 29 96.6 37 ............................G GCATTTCGGCATATGACAACTGCTATGAATATAGTAC 7616 29 100.0 38 ............................. GTTCATTTGTATTTCTTCCAATTTTCTGTTCTATCCTA 7549 29 96.6 144 G............................ GATAAATTTTATAGATTTGTAAGTTTAGTGAAAGAAGAATGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTGTATAGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATAGAGATAA 7376 29 86.2 37 GAG.........................G GTTTGAGAACGCTGTATAAAGCTTGTAGCTAGTTCTT 7310 29 89.7 37 G..............A............G GTTGCATCATTAAATATTTTCCCTACAAACTCTTTTC 7244 29 100.0 37 ............................. AGTACATACAAAGAGTCTATAAAATTATCTATAAAGG 7178 28 82.8 0 G...................AC.-....A | ========== ====== ====== ====== ============================= ================================================================================================================================================ ================== 8 29 92.3 52 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTGATTTAGAAGAAAACGAACTCAAAGGCGTTTGGGAAACTAATGGTTCTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGATAAGGTTAGAAATTGGATAGAGGAAAATAATAGACCTACTAAGATTGCAGGTGAAAAGAAAAATTATCATGTGGTTTATAAAATTGAGTAAATTTATCAGTTGTATTAAATAATATATTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATATTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGTGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAAAAAATAAGTAAAATAATATAGATAAAGCACTTGGATATTATGATGTTTCAAGTGCTTTATATGGTATAAAATGGTATAATGGAAGTAGG # Right flank : TTAAAAATAATTCAAAAACACTTACAAATGAGTAAGTGTTTTTTTAATGAAAGGAGGTGATAATAATGTAAAAATTTTACTAATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGATAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAGGTTAAGGAAAGTTTATATACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAAT # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-1.59, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : TTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 10103-9350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000020.1 Clostridioides difficile strain BfR-CL-00674 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10102 29 100.0 37 ............................. CTACTAGAAAAAATAACAACTCCACATTTGCCACTTC 10036 29 100.0 36 ............................. TATTCGCAGATAACTAAAAATTAAAAAATAAATTTT 9971 29 100.0 37 ............................. AACCTTCTTCCATTATTTTTTTGTTATCTTTTAATTC 9905 29 100.0 37 ............................. CAGCAGTATTAAATAATCTTATATCTATGACAAAAGG 9839 29 100.0 38 ............................. AGTGTTAGAGCAAATCGTTTTTAGCCCTTCCCAAGCAG 9772 29 100.0 35 ............................. TCGGATTAACAGTTGGAATAGGGGCTATTGTTATA 9708 29 100.0 38 ............................. ATATCTATTTTATCGAGGTATTTGTCTATTTTATTTTT 9641 29 100.0 36 ............................. GTTGCATTTGTATATCCTGTACCATCACCAATTATT 9576 29 100.0 37 ............................. GACTACGAGAGGGCATTTGTTGCTGCTTCTATAGATA 9510 29 100.0 37 ............................. AGTGTTGAACTAGCTTCATCTCTAATCTTAACTGCTG 9444 29 100.0 37 ............................. GGGTGGGAGATATGGCAACTATCCACACATGAAATTG 9378 29 82.8 0 ................G....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GAAGAAGAATTATCATGTAGTGTATAAAATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGGGGGGTTAATACAATGTATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTATGAGAAAAAATTAGAGAAAAATAAGTAAAATAAATATATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTGTATGTTAAAAAATGGTATAATAAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTTAAGTATAGTTTAACAATTGGAATACAAGGCATTGAGGGTGTGTGATAAATATTATCAATTGCACTACTCATGGCTCACTGCAAATTTAAGAGAGTTGTATAGGTGTAAGTCTTGGAAATACACAATTTATTTTGGG # Right flank : TAAATAAAGAAAAGAAAGCACTTACAAACATGTAGGTGCTTTTATTTTGCTCAAATTTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAAACTCTTGATTTATTGTACGTACTATATTATAATTTAAGTACGGACAATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCAGATATATTAAATGAGTGTGCTGATAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTTTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAAATAATGAATTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 13463-12841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000020.1 Clostridioides difficile strain BfR-CL-00674 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 13462 29 100.0 37 ............................. CCTATAACTTTATTTTTTAAAGTAACATTTTTTAAAA 13396 29 100.0 36 ............................. AAGCAATAGGAGCAACAGCAGAGATTGCACTTAACG 13331 29 100.0 36 ............................. CAAGCTACAATATTAAGCGCAATTAAAAGAGGTGCT 13266 29 100.0 38 ............................. TTGGTAGGAGCATTTGAAACTGCTGAGCATAATTACAA 13199 29 100.0 37 ............................. TCTAGCCACTAAGGAAAAGCTGACTATTAAGAAAATA 13133 29 100.0 36 ............................. ATAGCAACTTTAGTCAAACTCTTACTATCATTTAAC 13068 29 100.0 37 ............................. TATTGTGCAAAGCTTGAGTTTTATGAGGATGAGATTG 13002 29 100.0 37 ............................. ACATAAATTGCTGCCATACTACTTCCTCCTTCAAATT 12936 29 100.0 38 ............................. ATTAAACCACAAGACTGGAAAGCACCATATATGGACAT 12869 29 79.3 0 ................G....GAAA..C. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 97.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTAAAATCTAAGATGTTGAGGGTGCGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : AAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTACCTTATATTGGAAATTTGTATAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTACGCTATGGGATTATTCAAAAAGAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTCTTATGTGATGAATGCTTTGAAAAATGCAGAGGTGAAATAGCTGTTCTTGGCAAAGGACTAAAAAAACTGACAAGTAAGGAAGTTATAAATGCTGTAGAGCTATGTAAAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGACATCCTTTATTTAATAGAGAAGAAATGATTTGTCTTTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTGGAACAGGACCTATACCTATAGTAGATGTATTTGAAGTTTCATATTCAGATAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 81476-80986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000004.1 Clostridioides difficile strain BfR-CL-00674 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 81475 29 100.0 37 ............................. GGTAATTCTGGTGATTTGGTTGGAGTTCCTGGTGAAG 81409 29 100.0 36 ............................. GTAAATCAATATTTTCCATCTCTTCTATGCTATCAA 81344 29 100.0 37 ............................. TTTACAATTCCGCACAGATTTTTATCTAATCTTAAAT 81278 29 100.0 38 ............................. ATTGCTAGTATCAGCATTACTCCAAGTTGCTAAAGCCC 81211 29 100.0 37 ............................. AGGGAACCCCACCAGCCCTTAACTCTATTGTGTTACA 81145 29 100.0 37 ............................. TGATAGAAATCGCGATTGGAGCAACAACAGCAATAGC 81079 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 81014 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACTAAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 253582-252258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000006.1 Clostridioides difficile strain BfR-CL-00674 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 253581 29 100.0 37 ............................. TATCTATATGTCCCCTGGGGACATCTTTTAAAATTAA 253515 29 100.0 37 ............................. CAAACTTTATAATATTTTAAACTTATCATATAACAAA 253449 29 100.0 38 ............................. GGAACATAAACATCTAAACTACCACTATTAACCTTATC 253382 29 100.0 37 ............................. TCAAAATTATTTAGTAATATTAAACAAAATATTAGTC 253316 29 100.0 36 ............................. AGACATAGCAAGTATAAGAGGATGCAATCTTTTCTA 253251 29 100.0 37 ............................. CCTAGAGACAACAGAATAAACATAATATATAAGCATA 253185 29 100.0 36 ............................. GTAATTTTAAGACTTTTTGTGTATGGAAATGGAAGG 253120 29 100.0 36 ............................. GTGTTAAATTGGTATTTTCTCTTGCTTTTTGATAAA 253055 29 100.0 37 ............................. TAGATTGTAGCCTCTTGCATTTTAATTATAACATAAT 252989 29 100.0 37 ............................. TATGGCAACTCAATAGAATCTATTTTAGGGATATTAA 252923 29 100.0 38 ............................. GTACTATTTCCAACTTTTTTTTCGAGTTCTGAATACTC 252856 29 100.0 37 ............................. TGTAAAATGTGACAATTTCAGTCTCTTTACTCTGCAA 252790 29 100.0 37 ............................. AAAGTTTTGAAAGGCGAAAATCTTATTTTTTCAGATA 252724 29 100.0 17 ............................. CTTTTTGAGAATGCACC Deletion [252679] 252678 29 100.0 37 ............................. ATCCTCGATAAACTTTTCTAAACTTTTTAATTTATTG 252612 29 100.0 37 ............................. AAGGGTCTGGATGATATGATTATTAATTCAGAACAAC 252546 29 100.0 36 ............................. AAACTAACAAAATTTCTAACATATTTTCTAACTTGA 252481 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 252415 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 252350 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 252286 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.0 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAATAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57843-56896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000007.1 Clostridioides difficile strain BfR-CL-00674 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 57842 29 100.0 36 ............................. CAAATATAAACTTTTTTATTATAAGCATTAGCCAAA 57777 29 100.0 37 ............................. ATGAAGCTTGCAAAGTATTCTCTAAAGTCCTCTGCCT 57711 29 100.0 35 ............................. TGGTACACTGTATATAACATATTATTAATACTTGT 57647 29 100.0 36 ............................. CATATAAGTGCTTATGTTACAGCTTATGCAAGGATA 57582 29 100.0 37 ............................. TTGAGTGACTTATATTGTTTGACAGCTCTTTGTAAGT 57516 29 100.0 36 ............................. TATGAAAATAACCCTAGAAACAACCATGATGCAGTA 57451 29 100.0 37 ............................. ATCTTTCTAGCTATTTCACAGTCTTCTTTATTATCGC 57385 29 100.0 37 ............................. AATATAATTATAACACAGGAGTTCCTTAAATGAAAAC 57319 29 100.0 37 ............................. AGATGTAATGAGAAGTTTATTGTATCTTGTGTAGATG 57253 29 100.0 37 ............................. TTAAATATATCAGAAGGAGAAAATAGAGATGGGAAAG 57187 29 100.0 37 ............................. TAAAAGTATTAAAAATACTAGTTTTTATAGGTAAGAG 57121 29 96.6 37 ............................A AAAGAAAATTTTTATTAGCCTTACATGCACCACATGT 57055 29 100.0 37 ............................. TCGTACGGATGCGTACGACGTAATTATAATTTAATAT 56989 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 56924 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 129703-130915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLS010000009.1 Clostridioides difficile strain BfR-CL-00674 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 129703 29 100.0 37 ............................. TAATCTATTGATGGAAGAGGAGCAGGGTCAGCAGCGA 129769 29 100.0 36 ............................. GATTATCTACTGTTGCAGGAAAAGCAATTTTGGTTT 129834 29 100.0 38 ............................. TATTAAGGGGTACTCTTACCCTGTAATTTCAATACTTT 129901 29 100.0 38 ............................. GCTTTTGAAGAACAAACAATAGATTTTTACGACTCATT 129968 29 100.0 37 ............................. TACTGAAACCCAGCCATATACATATTTACATACTCCA 130034 29 100.0 39 ............................. TCCATTCTTGCATCACTTGCTCCAGTAGTCATAACAACA 130102 29 100.0 38 ............................. CATTATTGTTGCTGAATAAATCCACTTCTCATTCTCAA 130169 29 100.0 38 ............................. ATCGTAAGAACCAGGAATATACGGAAGATCGTAGAAAA 130236 29 100.0 35 ............................. AGAGTTGAGGTTGAGTTGGAGGATATTATTTAAGG 130300 29 100.0 36 ............................. TTTTTATTCTAAGAAACTTTTCAATTCTAGTTCTTC 130365 29 100.0 32 ............................. AGTCCAGACCCTAATCCTCCTGTTGACCCAGA 130426 29 96.6 36 ........C.................... ATAGTCAAAAGCAACATCATAATCACGTATATTATC 130491 29 100.0 36 ............................. CAACATGTCAGTAATATTGAAACAGGAAATTCGAGT 130556 29 100.0 37 ............................. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 130622 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 130688 29 96.6 38 ...............T............. AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 130755 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 130821 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 130887 29 93.1 0 .......G.......T............. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAATATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAACATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //