Array 1 431965-432480 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGT01000005.1 Klebsiella variicola strain VRCO0021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 431965 28 100.0 33 ............................ CATCTTGCCGCATTTGCTGCACTTCTTCATGCC 432026 28 100.0 33 ............................ CGCCATTTGTAGACTGCACGCTCGGAGCGCGGG 432087 28 100.0 33 ............................ TCGCATTTTTAAGATTAGGCGCGCTCTTTAACG 432148 28 100.0 33 ............................ TGAGGGTGAAAGCAGGCTCTACGGCCTTAAGGG 432209 28 100.0 33 ............................ GGAAACGGACGAGATGCAGACGATGCTGCCGGA 432270 28 100.0 33 ............................ TGGCGTCGTAGACGTGGCGCGTTGAGCCGCAGA 432331 28 100.0 33 ............................ CATCATGGCGGCCCAGAAGGCGCAGACCAGCGC 432392 28 100.0 33 ............................ TCAGTGGACCGGCCAGGCGTATATCAATCTGGG 432453 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGAAGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATATCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACTCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCATGTTTCTTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAACTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441247-442615 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGT01000005.1 Klebsiella variicola strain VRCO0021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 441247 28 100.0 33 ............................ TTTGTACCCGTCGCCGCTGGCTTCGTTCCCGTT 441308 28 100.0 33 ............................ CGAAACCCAGATACCGGTTAGCCAGATTCTGGC 441369 28 100.0 33 ............................ TCCACGAAATCTTTTTTAAATTTTACGCGGATC 441430 28 100.0 33 ............................ CATAGCTGGTTTGCGCGGTGGTAGACACAAAAA 441491 28 100.0 33 ............................ CGCAGACATTACCACCCCCTGCGAAAACGCAGC 441552 28 100.0 33 ............................ TCTCGCGCCCGTCTACCGTCGCGCCGCTGACGG 441613 28 100.0 33 ............................ CGGCTTCCAGCGTGTTCCAGCCTGCCTTGAGCG 441674 28 100.0 33 ............................ CGCTTTATGAAATCAGGCAACCGGTCGTATGCA 441735 28 100.0 33 ............................ CAGCTGTAGAGGCGCCTATCGTGATTTCGTCGT 441796 28 100.0 33 ............................ CAAAGTGGAGGCTCGCAGGATAGAAAGCTGGTT 441857 28 100.0 33 ............................ CTTTGATGGGGCGCGGCGAGGTCAGTAAGGAGG 441918 28 100.0 33 ............................ CTCGATAACCCAAACCCAGGGGTTAGCTTCCCA 441979 28 100.0 33 ............................ CACGGGAGATGTTGGCGGCGGTAACTGGATGCC 442040 28 100.0 33 ............................ CGCTGATCGCCTACGGCGTTTACCCGGATTCCT 442101 28 96.4 33 ...............A............ CATCACGGCGGCGCGTTCTGCGTCACTGAGTGG 442162 28 100.0 33 ............................ TAAGGCGGCGTCTATTGGCGATATAGTTACGGA 442223 28 100.0 33 ............................ CGTCGTTCCCGCTAAAAGCGATAAGTGGGTGAG 442284 28 100.0 33 ............................ TCTGTCTGTGTATATCCAGCGCGGCAAGCTGCG 442345 28 100.0 33 ............................ CGTGAAATACCAGATTCCCGCGCAGCCGCGATA 442406 28 100.0 33 ............................ CGCCGCTCCCGTCCGGCGTATGCGCCAGCAGGT 442467 28 96.4 33 ...........A................ CATAGCTGGTTTGCGCGGTGGTAGACACAAAAA 442528 28 92.9 33 ...............A.....C...... CCCCGCTTTTGAGCACGCGCTGACATTTGTTCT 442589 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTGATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTTTTTCGCAGTATTCCTCAACCGCCTGGCTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACGCATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGTCAGCGCAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAACAATAACGGCGAATGATTATTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGCCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //