Array 1 99894-102141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOFA010000013.1 Prevotella copri strain MSK.21.28 NODE_13_length_102177_cov_248.052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 99894 30 100.0 36 .............................. TTCAGATAACCCTGCACCATGTCAAGAGCCTCCTTC 99960 30 100.0 35 .............................. TACGTGACAGACTTGATTACCGAGACAGCAAAGAA 100025 30 100.0 37 .............................. AAGGTATGCCAATACTTGAATACGATGTAATCGGAGA 100092 30 100.0 34 .............................. CTCAATAAATTCATGTTGGAATGCTAATAGAAAG 100156 30 100.0 35 .............................. GAGATAAGCATCTTTACCAGCCCCCTTCTTCTTTA 100221 30 100.0 34 .............................. AGTTAGGTGCAAGACGTTCAACATAGCACCTGGT 100285 30 100.0 35 .............................. AAAAGAGAAACTCTTCTATTTCACCTTTTCATTTT 100350 30 100.0 34 .............................. ATTCGAGGACTGGGACACAGCGGACACCAAGCTG 100414 30 100.0 36 .............................. GTGTACCTTGCCCAGTATGGAGCCTATTTTGCGGTT 100480 30 100.0 35 .............................. GCCATAAGGCTTTGCTGTAATCGTAGAGCCATCTT 100545 30 100.0 34 .............................. AACTGCGGTCATCGAAACACACGAGCAGTACCCT 100609 30 100.0 37 .............................. TTGGTATTGCGTGACCCTCGCGGTTATCCTTATCAGG 100676 30 100.0 36 .............................. GTTGGTACCGAGCTCATATTGAATAACGGTCCTATG 100742 30 100.0 37 .............................. AAAGTTATTGGGAGCCTTAGATGCAATCGATAAGCTA 100809 30 100.0 37 .............................. TATGTAGCTTTATTATCAGCAGACAAATTTTGGTTAA 100876 30 100.0 34 .............................. CCCAAATAGGGTGCGGTGTCACTTTCGCTATTTG 100940 30 100.0 34 .............................. TACGTGCTTAGACATCAGGAACTCATGGAGATAC 101004 30 100.0 34 .............................. ATCACAATTACCATTTCAGTCTGTTTGCTATCGA 101068 30 100.0 34 .............................. TTTGGATGTACCGAAATGGTCGTAGTTGTAATCA 101132 30 100.0 34 .............................. ATCAAACCTAAGGCATAAATCAATACCTTAATGA 101196 30 100.0 34 .............................. GAGATAGAGGGGGAAAGGAGTGCCCTTGCTCTGA 101260 30 100.0 34 .............................. TTTTATCAACGAAATCATCATCAAACACATAAAA 101324 30 100.0 36 .............................. AGACGAAGGACGAAATCACGCAAAGCAAGATTTGCT 101390 30 100.0 36 .............................. AATCCTTAAGACCTTTTTCAAGATTAGAAAGGTCTT 101456 30 100.0 35 .............................. AGTTCAAGAAGGGCGGCAAATCCAAGGAAGACAAG 101521 30 100.0 34 .............................. TGCGATGATGATGAACAATCCTGGCTTGCTGAAA 101585 30 100.0 38 .............................. ATTCTCCTTTTGCATACGTTCAGACTGAGCACCAGCAA 101653 30 100.0 35 .............................. TCTCGCTGCGGAGGTCACGCACGGTGTTCACCTGC 101718 30 100.0 37 .............................. GTAGAGACAATCCCTGCTCATAGGCATCCTTCTGTTC 101785 30 100.0 34 .............................. GCCTTTTTCTTTTTAAAACCTAGAAAACATGAAT 101849 30 100.0 36 .............................. AAGGGCACTATAAGGCACAAAAAAATACTGAACATT 101915 30 100.0 37 .............................. AATGGAATAAGGGTTTTCAACGCCATATGCATCAAGA 101982 30 100.0 36 .............................. TTTATTCTCGCTTCCGGCTCACTGCCAGGTTTCTCT 102048 30 100.0 34 .............................. GATGTAAACGTCTCACAAAGTAGGCAGATAGCAA 102112 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 35 30 100.0 35 GTTCTAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTAGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGTCTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTATTTTTCCGTTTCTAGGTTCGGAAAAACCTCCAAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCTGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCACAAACCTATTGATTCTTCGAGCATCTATGCCTAAGGATTAACGG # Right flank : AAAGTTATTGGGAGCCTTAGATGCAATCGATAAGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 56-2111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOFA010000054.1 Prevotella copri strain MSK.21.28 NODE_54_length_11328_cov_258.408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 56 30 100.0 36 .............................. ATCGCCATGTTCTTTAGAGATTTTACAAGCCACTTG 122 30 100.0 34 .............................. GGGACAACACAAACTTGTTTTGTCCTTATTTCAG 186 30 100.0 37 .............................. TGCTTGAATGGCGAGGTAAGAAGTTTTACGATGCGAG 253 30 100.0 34 .............................. GGAACAACGCAAACTTGTTTCGAGCGGATTTCAA 317 30 100.0 34 .............................. AGGAATTGCAGGACGCAATGGCTTCTCTTTTTGA 381 30 100.0 38 .............................. ACAAGAAAAAGGCAGCTTTGACGGAAGAGCAACTGAAA 449 30 100.0 35 .............................. GTTGGTACCGAGCTCATTTTGAATAACGGTCCTAT 514 30 100.0 34 .............................. TCCTAAAGCCTTGAAATATGCAGCATTCATAGCA 578 30 100.0 37 .............................. ATGAAGGAACTTGAGCGCAAGTATATCGCTTATCTCA 645 30 100.0 35 .............................. AAGATCAACGCCGCTTGCGGTATGCAGGATGGTCA 710 30 100.0 38 .............................. TTGTTGAGGATCAATTCTGTGCCAACTGGGTATGTGGC 778 30 100.0 35 .............................. TTGCATCATTCGCAATCATGCGCTGGGCATAAAGC 843 30 100.0 33 .............................. GAGATAACGGTCATCTTCTTTTTCTTTTCTACT 906 30 100.0 34 .............................. TTGTTTTTGATGATATCCAAAAAACTTGTTCTGT 970 30 100.0 35 .............................. GCTGAAGCAAATCTACCGCATCAGCAAGAGGGTGA 1035 30 100.0 35 .............................. TAAACAAGTCGATGAGCATCATCTTAATCCAGAAC 1100 30 100.0 36 .............................. GCCTGTTGTGGTAGCCAACTTTGCCGAAGCCGGAAA 1166 30 100.0 34 .............................. AGACAAGAAGGAAAGGAGGAAGACAATGGAGAAG 1230 30 100.0 35 .............................. CAGAATATGATTGAGTTCATGCAATCAATCCTCGA 1295 30 96.7 35 ...............C.............. GGCATCGTGGAACTCGTTTTCTCGTCCGTTAGGCG 1360 30 100.0 36 .............................. AGAACGTCTTCTCTCGTAATGCTTAATTCTCCGTTC 1426 30 100.0 37 .............................. TACGAGGGCAAGTCTTGCTGGATGTTCATGGACGTCC 1493 30 100.0 36 .............................. GAGAGTGATAGTTTCAAGGATCCAGAAGATTCTGGT 1559 30 100.0 34 .............................. CTTGATGATTTGCCCAGGAGTTTCACATTAACAG 1623 30 100.0 34 .............................. AAGCTTATTAAGGTTGTAAGGATGTTCGAAGAGA 1687 30 100.0 37 .............................. TATACCGGCATCAGGGGCAAGGCTCCTGAGATGGGCA 1754 30 100.0 34 .............................. TGCGGAACTGCTGCATGACTCCCTGGATGGAATC 1818 30 100.0 37 .............................. GTGAGGATGATGCCAGAGTCGACCTTGGCCTGCACGA 1885 30 100.0 36 .............................. TCTGTAAGCCCTCTGAATTACACTGTAGCTTATGGT 1951 30 100.0 35 .............................. GCCAATACCGCATTGATAGGAGTCACCGCCTGACC 2016 30 100.0 37 .............................. TGCTTTATCAGTAAGTCCATCACCTCGCTGATGTCCT 2083 29 90.0 0 ........C................-..T. | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 99.6 35 GTTCTAATTGTACCTTTATGGAATTGAAAT # Left flank : ACCTTTATGGAATTGAAATAAAGTTATTGGGAGCCTTAGATGCAATCGATAAGCTG # Right flank : TCAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGTCTCCTCCGGTCACTGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCATTCTGCCAACTCAGCCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAAGTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGGTTTCTGCACAATTGGTTGTACGCCATAACGAATAAAAATGTTTTTCTGTATTTATTGCCACATCTATCACCAATGCATTTAACTCTCTGATTATAAGCGAATAATGCGTGGCAGTAAGCGGTATTTCTGTTGCCACCTAATGCCACGCATTGCCACGCTTTTTTTATGAGGGAATGAGATGGAAGGTGAGCAGGTTATTTCCTAACTACCAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //