Array 1 1132212-1130921 **** Predicted by CRISPRDetect 2.4 *** >NC_019042.1 Streptococcus dysgalactiae subsp. equisimilis AC-2713, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1132211 36 100.0 31 .................................... AAATTTCACAAGAATTTTTGGATAAACTTTT 1132144 36 100.0 30 .................................... AAGTCGTGATGCTATTGATACAGCAGAGGT 1132078 36 100.0 30 .................................... GAGGAATCTCGTGCTTATCCCCGTTCTCGT 1132012 36 100.0 30 .................................... TAGGCAATCGTCCGCAGATGCTTGTATTGA 1131946 36 100.0 30 .................................... AACTCAAAACTTAAAAACACGTAAAACTAT 1131880 36 100.0 30 .................................... AGTCTTTTTGGCAGCGGGTTTTACCTATCT 1131814 36 100.0 30 .................................... AGATGAACGTGTATCACGCATGATTACATC 1131748 36 100.0 30 .................................... AGATGAACGTGTATCACGCATGATTACATC 1131682 36 100.0 30 .................................... ACGAGCATAGCAATTATATGACTGGAATTT 1131616 36 100.0 30 .................................... AACTGCCGCTGGGAAAACGACCGTTGGTGT 1131550 36 100.0 30 .................................... GTACGATAGGCAATTTCTAAAACGTGTAAA 1131484 36 100.0 30 .................................... AATTAGATAAGACAAATGCCCTCGCTCTTG 1131418 36 100.0 30 .................................... CATACTCAGAGAGCGAGTATAAAAAATCTA 1131352 36 100.0 30 .................................... TTGCTCATTCAAGCACCCCACGAATACCAA 1131286 36 100.0 30 .................................... TACAACAACACGGTTAACGACGGGGTCACT 1131220 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 1131154 36 100.0 30 .................................... GGATAAGTAACTCCGCATAGCCACTAGCTG 1131088 36 100.0 30 .................................... TTTCAACGAGTGGTCTCCATTTTTCAACTT 1131022 36 100.0 30 .................................... CCTTTGGGACGTTATCCTCATCCAAGATGT 1130956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : TAGTTAAGTGAATAGGTTACACTAAACTAGACAGAATTTATAAAGTGTTCTACACTAAAGAAAACAGGAGAACAGATATGTCTAGAAAAATACGTCGCCACTTCACCGATGATTTTAAGCAACAAATTGTTGACCTCCACAATGCTGGAATGAAACGAAGTGAGCTTATCAAAGAATATGAGTTAACGCCCTCAACCTTCGATAAGTGGGTCAGACAAGCCAAACTAACGGGTTCCTTCAAGTCTGTTGATAATATGACAGATGAACAACGGGAACTGATTCAACTCAGAAAACGCAATAAAGAACTCGAAATGCAATTAGATATCCTAAAGCAAGCGGCAGTGATTATGGCACGAAAAGACAAGTAATCACTGCAAACAAGGATAAATACAGCATTTCAGCCATGTGTCGTTGGTTGAACATTCCTCGTTCAAGTTATTACTACCAAGCTGTAGATCCTGTGTCAGAGGCTGAACTCGAGGATAAAATTACCTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1582233-1581277 **** Predicted by CRISPRDetect 2.4 *** >NC_019042.1 Streptococcus dysgalactiae subsp. equisimilis AC-2713, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1582232 32 100.0 35 ................................ AATACTTTGAGGGCAGAACAGGACTTAGAACTAGA 1582165 32 100.0 34 ................................ AGCCTTGCGACTCAGACACCGCTAGTCTAAATCG 1582099 32 100.0 34 ................................ TTCTACTATTTGGTCAGATATTGCTCTTAGATTA 1582033 32 100.0 33 ................................ CCATTGCTGAAGAAGTGTCGATATTTTCTTTTA 1581968 32 100.0 34 ................................ TTTGTCACTAGATTCTTTAAACTCCTTTATAAGA 1581902 32 100.0 34 ................................ AATCTCATTCATCTTTTTGGCATTGTTTTTTGCT 1581836 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1581770 32 100.0 33 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGA 1581705 32 100.0 34 ................................ ACTTGGACGAGTACAGACCCCAACTCTTTATATG 1581639 32 100.0 34 ................................ GATAATCTAGGGGATTTGATGCCATGACGGAACT 1581573 32 100.0 34 ................................ TACCCTAACAGGTACACAACCAGTTACATTTACT 1581507 32 100.0 34 ................................ GCTATTCTTATCAAAATTTAAGTAATTTTGGTTA 1581441 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1581376 32 100.0 36 ................................ TAACTCTGTCATTTCCCAATTTTTAGTGAGAATCAC 1581308 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.4 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //