Array 1 740-375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXET01000128.1 Xanthomonas oryzae pv. oryzae strain DXO-129 contig_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 739 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 673 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 609 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 543 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 476 31 100.0 40 ............................... GAGTGCCCGGGGTCGGTGTCGGTGTCGGCGCAGGCTGGCC 405 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 6 31 100.0 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ACTCGTAGCCGACCGACGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGGGGCGTGTTTGCGTTTCCCCCGTCCGCCGGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCGGGGCAAAAAGTTCGCGTCAATGCGCACGGATTGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAACACATCGGTAAAACGAAGCTATTTGCAGGACTGCAACAAAAATCCAGCTGAGGGTCAGGGCTAATCAGTAACAAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCTGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGGGTCTTGTGGGCAGGCAAACCATCGAGCACCAGATGGATTGGACGGCGACGGCCCTTCATCATTCGCTTGAGCAGGGCCACGAACAATTCACCGTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4432-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXET01000128.1 Xanthomonas oryzae pv. oryzae strain DXO-129 contig_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4431 31 100.0 34 ............................... AGTCGCCAGTGAAGTCTCCCAGATGATCCCCCAA 4366 31 100.0 34 ............................... TCAGCCTCAGTGGCAGCAGCCACGTTGACGGATG 4301 31 100.0 34 ............................... TGCGCGAAGGGTACGAGGATTTTTTGCGGCTGGT 4236 31 100.0 34 ............................... GCTGTGAAGCGCAGGCACTAAAGACCCTTCGGGT 4171 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 4105 31 100.0 34 ............................... CTGCACGTATTCAATCAGCGCGCTGTCGGTGCGG 4040 31 100.0 34 ............................... GTAATTGCAGCAGGTAGCAAAACATCAAAGCCAT 3975 31 100.0 36 ............................... TTGACCGTCGCGCCGAAGCTGCGCTGCGCGCGCACC 3908 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 3842 31 100.0 36 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCGC 3775 31 100.0 33 ............................... TCCCAGCAGGCCTTAACCGCATGGTCTTTGCAG 3711 31 100.0 33 ............................... AGAGGTGCTTGTTAGTGCTACGGGGGCGTATGC 3647 31 100.0 35 ............................... TGGGATCAGCGCACGGAATATGGTCGTCTGCGTGC 3581 31 100.0 34 ............................... CTGATTCCACTGCTCGATTGCCTTGAGGGTGTCG 3516 31 100.0 34 ............................... CTCAAGATTGCACAGTATCCAGAGGAGGTGACAA 3451 31 100.0 34 ............................... TGCATCTCCTCTGGACTGCTTCTAAACTCAGCAT 3386 31 100.0 34 ............................... CGTCAATACTGATCTTGCCTGCTATCGTCTCCAA 3321 31 100.0 33 ............................... CCAGGTGAGCGGAAGTCGTTCCTCTGGCTCAAC 3257 31 100.0 35 ............................... CAGCTGATGCTGGTACTTCAGCTGCTGAAGCTTCT 3191 31 100.0 35 ............................... CTGTACGGATGCAGCAGATTCTGGGCGCTTGAAGT 3125 31 100.0 35 ............................... ACATGTTCGTGACTACTTAGGAGATGAACGGGAAA 3059 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCGGTCCAGGG 2993 31 100.0 35 ............................... ATGGCAATGCGCAAAGCACATGGCAACACTGCCAC 2927 31 100.0 34 ............................... AAGAGCCTACGGAGCCGGGGCAGCATCCATTGCA 2862 31 100.0 35 ............................... TTTCAAATGAGCGATATGCACCTGCCCACTGACAG 2796 31 100.0 33 ............................... TTCCCTTGTATGGTGAGGATGGTCAGTTGGCAT 2732 31 100.0 34 ............................... TACAGTTAACAAGTGTGTTGAGGCAGGAGTAAAA 2667 31 100.0 35 ............................... ACCATGTACTATGTAGCCCTTTCCCTTGTGTGTGA 2601 31 100.0 34 ............................... TCATACACCTACCTGCCGTTTGAAAGTGTGTACG 2536 31 100.0 34 ............................... ATGACAACAGGATTGCAAATTTGAAGAAAAGGAC 2471 31 100.0 37 ............................... TAATATGTTGCGGACATAGGGTGGACAACCCTTGTTC 2403 31 100.0 35 ............................... TGTAGGTCCAGGCTCCCTGGCTCTGGCCTTGGTAA 2337 31 100.0 35 ............................... AGGTTACCTTGGCTCGGAGGCACTCAGCAAAGGTG 2271 31 100.0 36 ............................... AGCCAGACAATCAGCAGTATCAGCAGTGCAGACCAC 2204 31 100.0 33 ............................... TCTTCTAACTACATTATGTCGGCGGAGCTATAA 2140 31 100.0 35 ............................... CGGTACTTGTAGATAAACTCCTGCACCCTGAGCAC 2074 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCTGTGCAGGG 2008 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 1942 31 100.0 33 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACC 1878 31 100.0 34 ............................... TTGTGGGACACGGCGGATATGGAGATGTGGGAAA 1813 31 100.0 35 ............................... TCGTAGAGCGTGACAGTGCTGGGAAGGTCTTGAAC 1747 31 100.0 35 ............................... GCATCCACAGCAGGGATGCTTGCTCAACAAAGTGC 1681 31 100.0 34 ............................... GTCGGGTCGACGGACGGTCGTAGCTCACCCACAC 1616 31 100.0 34 ............................... CGGACTCAGTGGTGATCCGGTATAACCGAGTTGC 1551 31 100.0 35 ............................... CTCGCCAACGTGTGGGATATCAGCACCGCGACGGG 1485 31 100.0 35 ............................... CTGACGCGCCAGCCTGCGACGTACGCAACCGTGAC 1419 31 100.0 35 ............................... GCGCTGGCCGCCTTTACCTGGCGACTCCATCACCT 1353 31 100.0 35 ............................... TCGCTAGACTCGCAGGACTACGACAAGGTCGAAGC 1287 31 100.0 34 ............................... GACCGTGTTGCCGTGCGACTCGTAGCCGACCGAC 1222 31 100.0 34 ............................... TGGGGCGTGTTTGCGTTTCCCCCGTCCGCCGGTG 1157 31 100.0 35 ............................... TCGGGGCAAAAAGTTCGCGTCAATGCGCACGGATT 1091 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1024 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 53 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACACCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : AAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAACACATCGGTAAAACGAAGCTATTTGCAGGACTGCAACAAAAATCCAGCTGAGGGTCAGGGCTAATCAGTAACAAGATTGGACCCTCGCTGGTGATGATCGGCGCGGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGGGTAGTAACGTATCCACGGCCCGTGAAGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTTGCGACGGTGTTCAACGGCGAGCAGATTGACGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCCCGACGGGTATGAGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //