Array 1 2313087-2312860 **** Predicted by CRISPRDetect 2.4 *** >NC_017299.1 Clostridium botulinum H04402 065, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2313086 29 100.0 38 ............................. TGAACTTACCAGTAGCATTTTCAAGCTCTTCTTCTGTA 2313019 29 100.0 38 ............................. ATAGCATGGTCTACATATTTGTCAAAATCAGTTCTAGG 2312952 29 93.1 35 .......G......A.............. TTATGCATACTTATATCTATTCCTTTCATATAAAG 2312888 29 86.2 0 ..............AG....C......T. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 94.8 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTATATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAACTAGAATACCTGGTACAAAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCACGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGGATAGGTTTGCTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGA # Right flank : GAGTGATTACATTTTTAAAAAGGAGCAATACTTATGAAGCTATTGATAATAGGAGCAAGTGGATATTTAGGAAATACAATATATAAGAAACTCAAAGAATGCACTAATGATGATATCTGTGGAACTTGTTGTAAGTCGAGTAATCATGAACTCTTACAGATTAATGTTTTAAATAGATTAGATATAAAGAAATTGCTCTCACTTAAACCAGATATAATTATATGGAGCATTATGGATATAAAGCAAGAAACGTTCTTATCGCAAATAGGTATGGATGAGATAGTTAATAATATTTCTAAAGATGTACGCTTGATTTATATTTCTACAACAGTTGGAAAAGGAAAAGACCAGACTGAAAGTGTAATTCCGTATAGGCGTATGCCTGACGAATATTTATCTAAATATGCTAATGGTAAAATTGAAGGAGAAATTATTGTAAAGAAACACCCCAATTATGTGATTATAAGACCTGGGAGCATATATGTCTATGATTATGATGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2319554-2319326 **** Predicted by CRISPRDetect 2.4 *** >NC_017299.1 Clostridium botulinum H04402 065, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2319553 30 100.0 36 .............................. AATTACGAATTAATTTTTATATTAATCTTACCTTTA 2319487 30 96.7 35 ................A............. AATACTGTACTCATAAAAAGTACACTCATATCAGT 2319422 30 100.0 37 .............................. CTTATTTTTACCCTAAGCTTGTCTTTAAGTCCCTCAA 2319355 30 80.0 0 ........A......GA......C....GC | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 94.2 36 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : CTATTTTACTATGCTTGAACATTAACATAGGATGTATTTAAATCATTATCTCCCTTACCTGCTTCTATTGAATATCCTGTTGAACAGTAACATAGGATGTATTTAAATGAAGATAAAGAGTTAAGAATAGAAAATAAAATAAAGTAACATAAGATGTATTTAAATGAAGCCTGCTCTGCTGTTATTCTCCCATTATAGTTATTGAACATTAACATGAGATGTATTTAAGCAGGGAACCTAAATCTCCGATTTGGCGTGAGTCGCTTACTCCTTCGAAAATTGGAGAAGGAGTTTCATTAATGAGCATGGTATATATAATTAAGTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCTATTGAAACATAAGGCCTAGGGTAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACCTGGAAAAATTTCTTTAAAACATTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAGAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGCAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCTATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTCTATATAAATTGTTAGATACTAATTATTTGAAAATTTATTTAATGAATCATTATCCTTAAATAAGTTTTTTAAGCTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAACTTCAGCGTTTGGTATAAGAGATAATAATACCACAGCATTTTTTTCTAAAAGTTCTTCAACTTTGTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAGATTTTTATTTATATTATAGTTAACAGTTATTTCATATGGCTCT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2320040-2319824 **** Predicted by CRISPRDetect 2.4 *** >NC_017299.1 Clostridium botulinum H04402 065, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2320039 29 96.6 36 .......T..................... CATTATCTCCCTTACCTGCTTCTATTGAATATCCTG 2319974 29 100.0 26 ............................. GAAGATAAAGAGTTAAGAATAGAAAA 2319919 29 86.2 36 .AA..T.........A............. GAAGCCTGCTCTGCTGTTATTCTCCCATTATAGTTA AA [2319911] 2319852 29 82.8 0 .......T......GA...........GC | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 91.4 33 TTGAACAGTAACATAGGATGTATTTAAAT # Left flank : GGTCTTGTCTTAAATACAAATGGACAGGAATCAATCATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTCAAAAAGATTTGTATAATGAAGTTAGATTTGATATTCCAAATGCAAGATTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAGACCTTTGCAAAAAAACTAGAATGGATTTATATCCATATCTTAGTTTTTTTGTTTTTTATTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAGTTTTCCAAGTGAACTCAAATTCAAAACCTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTGTTTTTGAAAAATCAAAATCACATGGAAAAATTTATATAAAACCTTGTAAAATCAATGTTTATATGATATTCTTAGAAATAAGGAATGGCTATTTTACTATGC # Right flank : AGGGAACCTAAATCTCCGATTTGGCGTGAGTCGCTTACTCCTTCGAAAATTGGAGAAGGAGTTTCATTAATGAGCATGGTATATATAATTAAGTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCTATTGAAACATAAGGCCTAGGGTAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACCTGGAAAAATTTCTTTAAAACATTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAGGATGTATTTAAATAATTACGAATTAATTTTTATATTAATCTTACCTTTAGTTGAACAGTAACATAAGATGTATTTAAATAATACTGTACTCATAAAAAGTACACTCATATCAGTGTTGAACAGTAACATAGGATGTATTTAAATCTTATTTTTACCCTAAGCTTGTCTTTAAGTCCCTCAAGTTGAACAATAACATGAGATGTACTTAAGCAA # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:-0.09, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 2333669-2333110 **** Predicted by CRISPRDetect 2.4 *** >NC_017299.1 Clostridium botulinum H04402 065, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2333668 30 100.0 36 .............................. GTATGATTTTCTAACTTCTTTTGTAATATTAATATA 2333602 30 100.0 36 .............................. TTGACTTCCGAAACTATATTTATTATATAGCCATCA 2333536 30 100.0 36 .............................. ATTCATTTATTGTACCAGGATATAAATTACTATATC 2333470 30 100.0 36 .............................. TTATAGTAATAAGAAAGTGTTTTACTTATCATTTCA 2333404 30 93.3 37 A............G................ AAAGGTAATAGCTTTCCATTATCTAAATCAAGTGAAA 2333337 30 96.7 36 ...............G.............. CAATAAATAATTGTATATGTACCATCTTCTATAAAT 2333271 30 96.7 35 ...............G.............. GTACATGGACCCACCTACTGAAAATCAGTACATTA 2333206 30 100.0 36 .............................. TTGCACGTGCCATAAGGGGAATGATATCAAACTGTT 2333140 29 80.0 0 ........C........T..A.-.AA.... | AA [2333131] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGATATAGTAATAACCTATAATAAAAAAATGTACATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGATACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATAATAGTAAAAAAATAATACAGATTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATTCTAGCCATTGAAATATAAGGCCTAGGATAGGTTTTCATTATGAAATTTTAAAAAACAAAATCGCTTGGAAAACTTTCTATAAAACCTTGTAAAATCAAGAGGTCTGTGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TAATGTGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCGAAGTTTTAGAATGGAATATGATGGGTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTATGGGAACTGATTGCAACAGTGATGTTGAAAGAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAACATAAATAAAAGTATGCTTTTGGATAAGGATTTAAAGGAAGTACATCCAAAGAAACAGTACAAAAATTACGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGACAGGTTGTATATTTTTAATATTAGAGGTTTAAGTAAAGAATTTATAGATAAAATAGAAACTTGCTTATGTAATTTAGAAAGTAATGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 2336174-2335673 **** Predicted by CRISPRDetect 2.4 *** >NC_017299.1 Clostridium botulinum H04402 065, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================== ================== 2336173 30 96.7 36 ................G............. ATGTTTCCCATAGCAGCAGCTATGCTTTTTTCTGGT 2336107 30 96.7 34 ................G............. CCTGTAGTAAGTACAACTCCATTTGATGTACCTA 2336043 30 96.7 36 .........C.................... GCAGTTTTTATAGCATTATCCATATTCCCATATGCT 2335977 30 100.0 35 .............................. GCGGTGTATACGAAATTACAAAAGAATAATGAAAT 2335912 30 100.0 36 .............................. AAGATGAAAACTTCCTAAAAGATAATTATTTAAAAA 2335846 30 90.0 114 ................G...........GC AGGGACCCAAGTCTTTGATTTGGTGTGAATCGATTACTACTTGGAGAGCAGCAGTAGGAGTTTCATAAAAAATTAAAGATTTATAGTTTTTAAAGTTAGGTATGACTTTCAAAT 2335702 30 80.0 0 T..C........T.......A.......GC | ========== ====== ====== ====== ============================== ================================================================================================================== ================== 7 30 94.3 49 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GGACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTCTTTAAAATCTTGTAAAATCAATGGTTGTATGATATCCTTGAAATTAAAGAATGGCTATTTTACTATG # Right flank : TTATAGTTAAATTTGTGGTTAAAGAGAACTCTTATTCTTTTAAGTATAGGATTAGGAGTTTTTTATTTTAATCTTAATTTAATTATAGTTTTGGCATATATTAAAGATACATTGAAAGTAAGTTAAGTTTTTTATCTGTATTTTCTTTATATGTTTAAATACATTATTCTATGGTAATATAATAGGATAAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAGAAGCATTATATGGTAGATATATCTAAAAAGCTAGATAGCATATTAAAATTAATAGATAATGAAGAGTATTTTATTATAAATAGACCAAGACAGTATGGAAAAACAACTACATTATATATGTTAGAAAAAAGATTGAATAAAATGGAAGAGTATTTACCTATAAAAATAAGTTTTGAAGCCATAGATACGGAAGGATATAGTGAGGCTAAAAAATTTTTAAGTAGCATAATGATGCAAATAATAAATTACTTT # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.31, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //