Array 1 454778-456270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWW010000002.1 Salmonella enterica strain 383 NODE_2_length_580577_cov_198.677330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454778 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454839 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454900 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454961 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455022 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455083 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455144 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455205 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455266 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455327 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455388 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455449 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455510 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455571 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455632 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455693 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455755 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455816 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455877 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455938 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455999 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456060 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456121 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456182 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456243 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472402-474305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWW010000002.1 Salmonella enterica strain 383 NODE_2_length_580577_cov_198.677330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472402 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472463 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472524 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472585 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472646 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472707 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472768 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472830 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472891 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472952 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473013 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473074 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473135 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473196 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473257 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473318 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473379 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473440 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473501 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473562 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473624 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473727 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473788 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473849 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473910 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473971 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474032 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474093 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474154 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474215 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474276 29 96.6 0 A............................ | A [474302] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //