Array 1 395604-396231 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 395604 37 100.0 35 ..................................... AGGCATATTTTCCTAAGAAGTAATTATTAAGCCCG 395676 37 100.0 35 ..................................... CTTCGCATACGTAGCCATGCCAAGATATTCCGCAA 395748 37 100.0 43 ..................................... AGTTACGTCCGCGCCGGTGTACCTTTCTTGCATATTTTCACAG 395828 37 100.0 35 ..................................... AGATATCCCAAGCTACCCACATCAGCGTTATCCTG 395900 37 100.0 38 ..................................... CTTGGCTAGTTGTTTCAGTTGTTGATGGATGTTGGCGA 395975 37 100.0 35 ..................................... ATTAGATATGCTTTGGCTTCCGGCAGGATAACTGA 396047 37 97.3 37 .........................A........... CTCATGCCATAGCCACTGGTAACGGGTCCAGTGGTAG 396121 37 100.0 35 ..................................... ATTGAGGATTGAAACAAAACTAAAAGATAATGATT 396193 37 73.0 0 T.C.....A.GA......A.......CA......C.T | C,C [396209,396211] ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 96.7 37 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGAATGAACGGGATTTAGACTTATTTTGGCAAGCTTTGATTAAGGCTTGGGAATTTGACCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTAGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCTGTTCATCAGTTATTTGATAAACTGCAAATTAAAATTAAGTCTACTGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACGAAGTTGGCTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTGCACTGTCTAGTTTTTATTCATTAGGTGTTGTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGTTCTTGTGCTGTTTTCTGGAATGGGGTATTATGGCAGGGTTCGCGCAAATCGTTGTGGAAATGTCCTATTTCTAAGGGTTTGCGCGATCGGCA # Right flank : TGACAAAAACCCATACCACTCATCTAAACCCACGCCAGTAGTAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGATATTTAATTGGTTTATCCTCCCCTTCCGTCACCGACAAAATTACAACTTTAGCCTGTTCACCTAAGTCAAATAAAGCTGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAACCTGTGCCAGTGTTAATTTGCACTACTTTACAGCCTGTAGATTTAATTTTTTCCGCATCATTGGTAGTTTCTTGATCACCTTCAATGACGCTAATATTCAACTGATCTTTTAAATCATTAATTGTGCGAGTTAATAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 824603-824985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 824603 37 100.0 32 ..................................... GAAGATTTAATTCCTCTCTATGGTATTCAAGA 824672 37 100.0 35 ..................................... AAACCTTGAGAAATTAGGACATTGCTCAGGGGATA 824744 37 100.0 37 ..................................... GCCATAAACAATCCTTTCCTCATCTTTGCCTGTCACA 824818 37 100.0 94 ..................................... ATTATTTTAACAGTGATGGTTGTGGTGGCGGTTGCAGTTAAAATTACTCATAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 824949 37 78.4 0 G...AT.....C.A..A.......G...A........ | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 5 37 95.7 50 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGACGGACTAAAATCCACAATATCCTCAAGTCTTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTTAATAAACTGATTAAGGCTGATACCGATAGCATCCGTTTTTACTTCCTCTGTGCTTGCTGTCATGGTAAAATAGAAAGAATCGGTGGTGAACAACCCCGCGATCACACTGTTTTCTTCGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATGGACTATGATTATCTCATCCGCGCAACTGAACCTTGAAAACTATATATATATAGGCTTTCAGCCGCCCGCT # Right flank : CCTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAAAACTGTCACCTGTCACCTGTCACCTGTCACCTAAAAACTATCACCTATCACCTCAAAAATCCCATTTCCTGCAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGAAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTCCACATCACCCACTTTCAACAACACCACACCCAAATTTTGATAAGCTTCTGCATAATTAGGATTTAAAAAAATCGCAGCATTATAAGCATCAATTGCCTCAACAAACAAACCCATTGCTTTACATACCATCCCCAAATTATAATACCCAATCACAAAACTATCATCAATTTTTAAAGCAGTTGCATAAGCATTTTTCGCCCCTGGTAAATCTCCCGTCGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGTAATTTCACCGCCGCTTGATAATAA # Questionable array : NO Score: 7.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-1.52, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 1933664-1934065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1933664 36 97.2 35 ....A............................... TAAAACAACTTTCTATGTTCACAGAACAAGGAAGC 1933735 36 100.0 37 .................................... AGCGGAGGCATAAACCACGCCGCCCCACCAGCAATTG 1933808 36 100.0 36 .................................... CATCTGCAAAATGCCTTCGTACAAGCTGTTAATGTC 1933880 36 97.2 39 .............C...................... AATTACCGTTCTGATCGCGCTGGCAAGGGATTCCCCTAT 1933955 36 100.0 39 .................................... TAGGCTCGATCCAGATACGGAGCCGCTTCCTCAAATCGA 1934030 36 94.4 0 .............C.....................G | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 37 CTTTCCAAACTCATTTCCCCGCAAGGGGATGGAAAC # Left flank : TACTTGGGCAGATGTAATCAACCGCGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCCTTAGACTTAGCTGCTGGTGAAGTTGCTCCTGTTGCTTTGACTGCTCCTGCAATCAACGGTTAATCTGAAACTGGGTTTAATAAGCTTAGTTAAATAAGAAAATACCCTCCAATAATGGGGGGTATTTTTGTGCATATTTCTGGGAGCATTCCAAATGAATTGTCAATTGTTAATTGTCTATTATTGAACGGCTTGACAATTTCAGTGAAATCATCTATATTGATGTAATGTGTTCACATTTATCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTCAGGTGTGTGGATGGCTTGCACCATAAGGATTTCAGGCTGCAATTTTGACAATTTCTTGAGCTTTTTTTTCCATTTTCAAGAGGTGTGTAGATTAGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCCAGAAGTGAACT # Right flank : GAACATATTTTGCTATACTCTAATTGCTGATCAGGGACTTCCAGATAAAAAAATATACAATCAGTTCTTGTGGGGTAGGCATACTTCGACACGCTCAGTACAAGTCTTGCCTGCCCTTAAACCCGGACGGGCTAGAAGCCCATCCCACAATATTGGATCATTTATTTCTTGGAAGTCCTAGTAGTTACGCATTGACAATAAACTTTAAATGTGTATAGTCCTAAAACCCATATTTATCGTAGGGGTTTAGCATTGCTTAATGGTGTCAACTTAACCAAAAAATGCCTTATCTGTTAGCTTCCACACCCGCCATGAAATGAATTTCATGGCTAATAGCCAAAGTTTACTAAAGTAAACTATAGATTTATGGGTATTTTTAGTCATCTTTAGATGACTTTTGCTATTAGACTGGGAATTCATTCCCAGTCGGGTTATGGGTTTTACGTTAAGTTGACACTTATGAGCATTGCTAAACCCCTACAATATTGTTCTTTTTACGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACTCATTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 2597739-2596822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================= ================== 2597738 36 100.0 42 .................................... TATTATCCTCTAAGCTATCTATGTCTGCACCATTCAAAAAAC 2597660 36 100.0 42 .................................... TACTTCTGACGTTTTTAAAAGACTAGCCATGTAGTCGTAATT 2597582 36 100.0 61 .................................... TAAGCTTAAATATCGCCCCAGCTTCGATTTGCATCTGCTGTTTTTCTTTAATAATGTTGTA 2597485 36 100.0 47 .................................... TAATATGCTTGCAAACCAGCCGCATAGTTCTATTTTTTTAGACAAAG 2597402 36 100.0 37 .................................... TTAGATAATTAATTTTTCTGCGATCGCGTAAGTTATG 2597329 36 100.0 46 .................................... TTTGTCGCTAATAGTTGCCTGTCATCAAAAGCTGTTATATCACTGA 2597247 36 100.0 41 .................................... TTTCCATATAATTCCCCAGGCAGTATTGTTGGTTTAATTTC 2597170 36 100.0 42 .................................... CGCCGTAGCTCTTACCACATACATCTACTAAAATGTCAATTT 2597092 36 100.0 41 .................................... CTGACTACAGTAAGTGCTGGAAGACTAAGGATGGCACATTG 2597015 36 100.0 44 .................................... CATTTGAAAGCTTTGAAAGTGCAAACTACTGGGTAGCTGGCTTG 2596935 36 100.0 42 .................................... CGCCGTAGCTCTTACCACATACATCTACTAAAATGTCAATTT 2596857 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================= ================== 12 36 100.0 44 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAA # Left flank : GTAAGGCATCATTATATATTTCAAATGTGTCAAAATCAAAGTAGAGAGTTGATTGATTCCAATTATGACTATTTTGGAAACTATTATAGAGGAATTGTCCTCACAGAAGACGCGGGTTTACGGAAGTGAACCTCCTTATGAACCTCCTGATTATTTAATTTTGTAAAGTTTGATATTCCTGGTTATGGTGGTATGGAGATGGTTGAAATATCCCTCAGTTCTGGTTTTGGGCATTTGTAACGAAATGTAAAGGAATGTTTGGGTTTTGGCGCAGGAAGCTAGAAAGATTCACATTTAGTAATCTTTGGTAATTTTCAAAAAATGTTGGTTTTTTGGGTTGACATCTTGGAGTTTTTCGGTTAAATTATTTTTATTGGCTGGAAACGGCAATCTGTACCTTGAAAATTAAATACTGACTTTGCTTGTTACATTGTTGTTTCCGTAGCTTGGCGCAAACGCTCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : CAAAACTTGGGGAGAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTAGTTTTGATGAATATTCAATAAACTTTGATTTTCAAACACCCTCTTAAACAATTGTCAATTATCAATTATCAATTATCAATTTGAACAGCTTTTGCAGTACCAATACAAAAAAATTGAACTTTCCAAAATAGACAATAAACAATGTACAATTGAAAATTATATTGACTGCAATTAGTTCTTTTTTTTCCCCTAAAAAGAAAAAGTTTGAAACCTTAAATTAAACAATTGTCAATTATCAAATATCAATTATCAAATTGAACAGCTTCCCCTATCCACCCACACCGCAAATATTACATTGGTTAGCAGCAGGACAACTAGCCAACCGTTTGCAGCGTTCAATTAGACTATGGGTAATATTAAACAAACTGTATGGGGAAGAAAACTGGACAACGGACTTAGCAAAAAAATTTACCTACGCACAACTACGCGATCGCCTATTTTCCTACTATC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 2891044-2891711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 2891044 37 100.0 48 ..................................... CCAGAAGTGCTGGAGTAGTAGAAGGTCATAGCATTCTCATTGAAAATC 2891129 37 100.0 41 ..................................... CCCAGTATCTTTGACCTTCTGCTGGGTCAAAGAATACTATT 2891207 37 100.0 43 ..................................... GAGGTGGCATTGTTGACCACCGTTGTGCCTTCCACGGCGGAAG 2891287 37 100.0 44 ..................................... CAATATGGGTAATGTTTTGATGGTTTCTTAGCTTTAGGCTTAAT 2891368 37 100.0 39 ..................................... AATTAATCGGGCTTCAAAAATAAGGTAAATATGGATGTA 2891444 37 100.0 39 ..................................... AAGTCGGCGATCGCCTAATTAACCTGTTACATCAAAAGC 2891520 37 100.0 33 ..................................... ATTTTAGTTTGGATACATAAGTCACTGTTTCCA 2891590 37 100.0 48 ..................................... GTCTTGAGGCTCGAATGTTCCATCGGCACATTTGATGTTGATGAACCA 2891675 37 97.3 0 ...............................T..... | ========== ====== ====== ====== ===================================== ================================================ ================== 9 37 99.7 42 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : TGTTGGATGTAGCTGTTCTGGGCATGATTTTGAGGCTACATGATGTGATTTTCTGTATTTTACTATTTTTAGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCGGGAGTTGGGAGTCGAGACTTACGGAAAATATCTCTTTTTAGTTTTGTTTAGTTTTGTAAAGTTGAGAACTTGAGAAAATATCGCATTTTAACTACTAACATCCTTACTATTTCATCATTTGAGCGATTGTAACGGAATGTTAAGAAGTTTGATGAGTTTGGCGCAAGCAGCTACAGAGCTTTACATTCAGCAATATTCTGTAATCTTGAGAAAATGTTGGTTTTTTGTCTTGACATCTTGGAGTTTTTCGGTTAGATTATTTTTATTGGCTGGAAACGGCAATCAGCACCTTGAAAATTAAATACTTGTTTGAAATGTCACAGTCTAGTTTCCGTAGCTCGGCGCAAATGCACTCTGAAAGCTATTTGTGGCAAGTGTTTCGTAGGTATAGG # Right flank : CGTTTAAATGAATCAAATTGAAACAGATATTGCAAAGATAATTAACGCCCAAAGATTAAGATTTTCGTAGGTTGGGTTGAACAAAGTGAAACCCAACAAACCCTTATCAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCGATTTTATTTTTTTGTGCTTAACCGACAAGTATTGAAACAGATATTGCAACAATAATTAAAACCCAAAGATTAAGTTTTTCAGAACTTTTTTAAAGTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGTAAGTAGGGGATGCTGAATAAATGTAAAACCTGGATAAATCAAGGGATTGAGGATGATGAAAATTAAAATTGTGCCAGGCTTTAGGCACTGTGAACCTAAGAAAGCTTGCACTTTGTTAGTGTTTGCACAATTTCCAAATCAAAAAAACTCCTTGAACTCCTTGAACTCCTGACTCCTTGAACTCCTACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 3619769-3619961 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 3619769 37 100.0 35 ..................................... TTAATTTGTAACCAGAGGGGATCTGGGTATTCAAG 3619841 37 100.0 47 ..................................... CATTTATTTTCTTATCCATCTCTGGCGCTTTCTCAACGCCAAGAATG 3619925 37 94.6 0 ...................................AA | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 98.2 42 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Left flank : GCGTGGTATTTGATAAACTGCGGCAAATCAAAACTATACTGGAAAATCATGATTATATTTTAGCTATTAAAGCCTATCAAGAACGTTTACCAATTCGTTGTACAGGCGATTTGTTTAAGGAAAATGACCAGTTTATTTTACAAAATCCCCACAATTTTCAAATTGATAATATTTGAATGCTTAGATAGGGTTTAGGTAGAGATATTGATGGGTTTTTGGTACTGAGGAAGAAAATTTTTAAGAAATGATAAGTAAAGGTTGAAAATCTAGGTTGAATATGTTAAATTACTGGAAATGGTAAAAATATTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGCGTTTCCGGTTTTACAATGCCTTACTTATTGAGAATTTTTTGGCACTTATTGAGAATCAAAAAAGTGGTGTCGAAATGGGGATCTGAAACCCTTGCTCTGTAAGGCTTCCAAAAGTGAACT # Right flank : AGTGCTAAACTACCTAGTATTACAATCGAAAAATGCTAAGATTAAGAGTAGCCTAGTTCAACCTAACTTCAACACTATGACTAATATTAATATCACTGTACCTGAAGCCCTAAAAAGTTTTATTGATGAAGAAATTGCCGCAGGTAATTATAATTCAGCGAGTGAATATTTACAACAGTTAATCATTCAAGAAGCAAGACGGAAAAATAAAGGAAATTTAGAAGATTTTGGAATAAAGTATCAAGAATTGGAAAGTGCTTTAGATGAATTAGCTGATGATTTTGCAGCGTGTGTTGGTGCAAACGCACCTATTTTATCTGATTATGCTGTTAGTCGTGAAAGTATTTATGAAGACCATTATTAAAAATAGAAAATGGAATATTTAGTAGAACCTAAATTCAACACTTTCATAAATTTTACTCCTTAATTTTAAAGACTATTACAAAAATAAAAACATCCCACTGATCTTCCTTCGCGTGAAATAACAAACTAATCACAAG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 4238584-4238260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 4238583 38 100.0 33 ...................................... ACAGGTACTAATTTCTGGCACTGCTTTGTGATG 4238512 38 100.0 35 ...................................... CAAGAGCTTGGCGAATAGCCCCATTATTAGAATCA 4238439 38 100.0 34 ...................................... CATCTGCTCCTATCAAAAAATTTCCCTTGAGAAA 4238367 38 100.0 32 ...................................... AGCCGATGCTTCAGCTAATTCATCCCGCGCCG 4238297 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 34 ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAACC # Left flank : ACATCCGCTGCATCTGCTTCTGCAACTTCACAAATTACTTCACCCGTAGCGGGGTTAATGGTAGCAAATCTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGTCCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACGCTCCTGAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGGTTCTGGGAGTTATACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCGGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGTTGTAAAAAAATGCCTGTATCTCTTGATAGGCTTGACTTTGGGGTTGTTCTGCTTTTCCAACCACCCGCGCACGTTACACAGACTGGGTTTGGGCGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATGGAGTCACTCGCGCAATCGAACCTTGAAAACTAAATATAGACAGGCTTTCAGGATGCCGCT # Right flank : TCCAGACAAAAATGAGCTTGTCCTAAGTTGACCATTTTATAGACGAAAATATACTTATATTGACAAAAATTGACATAAGTTAGCTCAGAAAAATGCCAACTTGATATATAATCCTCAGATATCAAGTATTGAATCAGACTATTACCGACGCGAAAACCAAGCATTGATAGTGATAGTCTGTTTCCAAAACTTAACCTGAGAAAGTCGCGTTGGGCTACAGCGTGCAAGTCTACTGAGGGATAACCGCTCCCATGCTCCCGTTGAAGTAGAAAGTAAAGTCTAGCTTTGTCTAGGTTTTATATAGCAGAATATCAGTGGGTGCAGCATGGGAATAGTCAGGGAACATCACAAAAGCTTTGACTAAAATTCCCACTCCTAAACCCATTAATGCCATACCAAATAGTAAGCCTGGGTTGTTAGAAGTTGACAACATGAACAAGCCGATAATTATACCCAGGACGAAACCGATGGTTTCTGCACCGTACAGGACGATATCTACA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 8 5085837-5086971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080598.1 Sphaerospermopsis torques-reginae ITEP-024 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5085837 37 100.0 33 ..................................... CTCAACTACCTGCATATTCAATCTGAAAATGAC 5085907 37 100.0 33 ..................................... ATCGGTGGATACCAAGTGAAGACGACCTATTTT 5085977 37 100.0 34 ..................................... CTCTAACAATTCTCCAAAATTTATTGCTTTTACG 5086048 37 100.0 34 ..................................... TCTTTTAAATCGCTTACAAATTTTCTTAATTCAG 5086119 37 100.0 40 ..................................... AGGTAAATTCATTATATATAAGAATAATAAAAATATTCAT 5086196 37 100.0 35 ..................................... TAACCTCTAGTGTGGGCATCCATAGCCCATAAGTA 5086268 37 100.0 41 ..................................... CATTTATCAGCAGAATTTAACAAAGTTGATGATTATTCTGT 5086346 37 100.0 46 ..................................... TTTATAGTCCAAATAGGTGGACCATTCAATCAATTAGCTGTCACAG 5086429 37 100.0 34 ..................................... AAAACCAAATTTTCTATAACACCACCATAATTCT 5086500 37 100.0 37 ..................................... CCCTATAAGAAAAATGATCATCTGCACTAAAAAATTT 5086574 37 100.0 31 ..................................... TTGCTGTTTCTAACCTCAATCCCACACATAA 5086642 37 100.0 38 ..................................... CATTTTCCTGACAGTGCTATTGAGGATTAAAGTTGAAG 5086717 37 100.0 34 ..................................... ATACGATAGACCAGCTTCCTTTAGAATATCTCTT 5086788 37 100.0 37 ..................................... TGAAATTCTTTCTGCCACTTAGGGCTATTTAAATTAT 5086862 37 100.0 36 ..................................... CGCAATTGAAATTATTATCAGCCTGATTATTTGGGT 5086935 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 16 37 100.0 36 GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Left flank : TCAATGGTTGCCTTGGATGAAGATGGGTGAACAACCAGGACAACTTATATATAGTGCTACCGGTGGCAAGGTGGGCGGTTTTACAGAGTTACCCCCACTGTTACAAGCGGAAATTAATAACCGTGTGCCTTTGTATAAGCAAGCGCCGAATGCTTTTATGGAAGGGGAAGATATGACTTCTTGGTTATATTTTCAGAAGCATTTTTCTGATTATTTGGCTGGGGAAGTTTTTCCTTTACCAGCAACGGAGGAAGGTTAGTTTTTAGTCCGAAATGCGCGGATGGGTGGGTGTAATTTTTGAGGTGTTGAAAAAAATGCCTGGATCTCTCTCTATGCAAGGGTTGGGAGTTATTTGTGTAGAACAACCACCCGCGCACCTTACGCTGTCCTGGTTTCAGCGTTTTTCCCTCTTGACGCAATTCCTGAAATGGACTATCATTAGAACATCCGCGCAACCGAACCTTGAAAACTACATATATCTAGGCTTCCAGGATGCCGCT # Right flank : CTGGAGATAGTACCCAAAATCAATCTATAAAATTGCAAAGTTGCAACATGAAATAATTATGATTAAAATACAATCAACCAACTCCATAGCCTGTATATTCCCGCATTTCAGGAGCTTGAAAACCTAAAATAATATCTTCCTTTGCAACCCCTCGCGCTACAAGTTCTTGAGCCACCATCATTTCCGTCATATTTTGCTCAATCCAGATTTTTCCCTCTTTAATATCCAAATGTAAAACACAACCATAGACACGCCGATGGCCATCCCATCCAACATTCATGACTTGGTAATGATCTTGTTTAGTATCAAAAACAGTGTAACAATCAATCTTACCATTGGCTATCGGGATGGCAGCATAAGCAGTCAACAAAGACTGAATGATATTGCGATAAGATGCTATGGTATCCATTGTAAAATTACCTCTTCAATTGGGTCATAAATAATTTGTTTAATCTGATATCTCTCTATTGAAATTTGGGCAAATTCCCGCTTAAAAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //