Array 1 2039916-2038437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778174.1 Veillonella parvula strain SKV38 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2039915 36 100.0 30 .................................... GCTACAGTTGATATGAATGCTATGAACGCA 2039849 36 100.0 30 .................................... CGTTTTGCAAAAATAAAAAGACCAGTAAAC 2039783 36 100.0 30 .................................... ACCACAGCAGGCAAACCCATGGCAAACATC 2039717 36 100.0 30 .................................... AACTCAAAAATCTTGAATGTTGTTCTTGGT 2039651 36 100.0 30 .................................... CAAGGCTATACTCCTAATTTTACGTTTACC 2039585 36 100.0 30 .................................... GTATCTGTTGATGTGAATGTAGTCAATGTA 2039519 36 100.0 30 .................................... GGTAACATGCTATAGCCGACTTCCTTAGTC 2039453 36 100.0 30 .................................... GAAAATATCCAATTCAAGGGGAATACATAT 2039387 36 100.0 29 .................................... TAAATCGTGGAAGAAAAAAGTTACCGGTA 2039322 36 100.0 30 .................................... TATGCCAACGGTTTATTATTTTGATGAATG 2039256 36 100.0 30 .................................... TGTCACCCCATTAAGAGATTCAGTGAGTGC 2039190 36 100.0 30 .................................... AGAAGAAATCATTGGTATTCTACCTGTTGT 2039124 36 100.0 30 .................................... CATATGATGAGTTTAGATATTTTTGCATGA 2039058 36 100.0 30 .................................... TAGGAAGCAGTGTTAGGGTCTGGCTGAGTC 2038992 35 97.2 30 ......................-............. CTTGCCAACTTTCCAACCATTACTTTCGTA 2038927 36 100.0 30 .................................... GAAATGGCATTCATTGATAATGATGAAGAC 2038861 36 100.0 30 .................................... TACCGAATATCGCTTTATCGCCACCTGGTA 2038795 36 100.0 30 .................................... ACCCAATCTCGCCATCCATTGATACTGAAT 2038729 36 100.0 30 .................................... AAACAACTCATCAATAGGGCGTTCATGCAA 2038663 36 100.0 30 .................................... TATTGACCACTATTAATCCCGCATCACCTA 2038597 36 97.2 29 ...................................T TTAGCACAGAGCTAGGTAGGTGGTTTTTT 2038532 35 88.9 25 ...........................AA.-..T.. CATTAAGAACGTCCATGTACACAGA 2038472 35 77.8 0 .G.........T...G..CG..-...........TT | T [2038445] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.3 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGAAGGATAGAGCTGCAGTTTCGCCTTAATACTCGTGAGAATCTATTAAGGTAGGGCCTTATGCCGAAATCAAAGGACACAATTTATTGTGTCCTTTTCCTATTTTAATCATATTAAAACTATCTTTCTATCAAGATAATAGTTGAGTAATTATGGTTATTTAGTAAAAATTAAAACTGATTGATGAATAAAAATTAGAAAAGCTTGACATATAAGTAATGCTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTTTTAAGTAGTTATTAACAATAGTATATGTAAATTGAGTTAGTAGTACATATTACTAATGTTTTTTGTGTGAAATTTTGAGCACGGGTCTTATGATCTGTGCTCTTTTTGTTTATTGATTTATTATAGCGAAAGGCTACAAAAGTGCTTAACTTCGTTGTTGAG # Right flank : TAGAATAATAGAAGAGAATAATTTTCTAATTATTATAATTTTATGTATTAAATAGGATTAATAATTTTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGGGTTGCTTCTGTTGGTTATGCAATAATTGATGAAAATTATAATGTCCTAATTAGTGGGGTAAGACTATTTCGTGAGGGTACGGCAGAAGAGAATGTAGCACGCAGAGGGTTCAGAAGTAGTCGTAGAAGTATGAGGCGGAGCCGTCATAGATTGGATCGACTAAAAGAACTCTTGTCGAGTGCATTAGGTGTGAGTGGAGATCAATTTTATACAAATCTCTATGAAATTAGAGTTAGAGGACTTAGTAATAAGCTTTCGCCTGATGAATTGATTGCTGCAATCATTCAATTGGCTAAACATAGAGGTATATTTTATTTAAGTCCAGAGGATCTTGCGACTGAGGACGGAAGTAACCAGAGTTCAGCAGATATTATTCGAACTAATGAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //