Array 1 63126-63634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYO01000013.1 Saccharothrix syringae strain NRRL B-16468 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 63126 29 96.6 32 ............................C ACGTTGTCGTCGGCCCACTCGTCGGGGCGCAA 63187 29 100.0 32 ............................. GCGCAGTGCCAGAACTCCCGCCACGCCCGGTC C [63192] 63249 29 100.0 32 ............................. ACCGCGCGCACACGCTCGCGGAACCCGGCCAT 63310 29 96.6 57 ............................C CCGCACGCCGAGCGGGGGTGGTCCCGCCATGGGCGAGCTGAACGGAACTCCGGTGAC 63396 29 100.0 0 ............................. - Deletion [63425] 63421 29 89.7 32 CG..........................C CGGACACCACCCGCGACGCGGAGTCCCGGCTC 63484 29 96.6 32 ............................A AGGTGAACTTCGCGGCCCGTCAGACCTGGGAG 63545 29 96.6 32 ............................C TACAGCTATCAGATCGACGAGCGGGTTGCATC 63606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================= ================== 9 29 97.3 31 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : AGCAGTTCGGCGTACTCATCGGTGTTGCCGGACCAGGCACGCGCGAACGCCTCGTGGGACACGCGCCCGCACAGGAACAGGTCGCTGCCCCGCAACGCGTCAACGGCACCGCGCCTGCTGGTTCCGCCGCGGGTCGAGACCTGATTTGCGGCTGGGAGGAATCGCCGGGCACCACGGGCCCGACGGGGGAATGGGCGGGCGGCGCACCGTCCACAACGGCCGCACGCCCCCTGCCCGCCCGGCGGGACAGGAACGCGGTCCGGCGCGGTGCTGAGCGTGCCCCCGGTGCGACCTGTACCGCATTGACACCGGATTATCGGGCCGGTGACCTGGTATTTCGCGTCCGTCTGCCGCTCGACAGGACATCCCACCATCCGGTGACCAAATCATAAGTCGTCGGCCAGTGCTCTGGTGTGACGTCGCCTCACCGGAGCAGACTCCAGGCGGACAAACTGAAAGAAAAACGACGATCGGGCCTATATTGTGCCTGGTCAAGAAGT # Right flank : GGCGCCACCGGCCCCACCGGGTCAAGCGGTGCGCCCCTGGTGCTGTTGGTCACATGGGCGGAATGCCGGTCGAGCTGCGCCGCTGCCCACGCCGGGTCACCGCGATCATCGTGGCCGTCCTCGTCCTGCACCACGCCGAGACCCGCCGCCAACCACGGTGAGAGCACCTCGCTGCGGCCCACCCCGCGCCCCGTGCCGGTTCGGCAGGCACCACCACCGCAGATCACGACTACGCGGTTGACGTCGGTCCTGCCGGGCGCGTGGTCACTCATCGCAGCCGACAACTCCCGGAAGGACTGGTTTCGGCGAACGGACGCCGACGACATGATCAGCAAGGAGGAGTTCGGCAGGTTCCTGCGGGAGGTCTGGGGTACTACCGCACCCGAGGCGGTGGAGGTGTTCACGGATCTGGACGAGGACGAGGACGAACGCATCACCCGCCAGCAGTTCCTCCAGTCGGTTCGGGAGTTCTACCACTCCACGGACCCGGGTGCGTCGGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.51, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71946-72341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYO01000013.1 Saccharothrix syringae strain NRRL B-16468 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71946 29 100.0 32 ............................. CCGCGTTGCGGCCGGGCGGGCTTGGCCGGCTG 72007 29 96.6 32 ............................G AAGGCGTCTACATCAGCGTGCCCGCAGGCAAG 72068 29 100.0 32 ............................. CAGACGGCCGCGCGTCCGCGCTCCGTGTCCTC 72129 29 93.1 32 ...............A............G CGCTGCGCGACCCGGCCCGCTTCACGCCCGCC 72190 29 96.6 32 .....................A....... GTGGTGACCTGGCCCTTGGTGTTGCTGGCCGC 72251 28 86.2 32 .....-.T.................T..G TACTACCGAGTGTTGGCGATCGGCGTGGACAG G,A [72253,72273] 72313 29 82.8 0 .........AT.T.........C.....A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTCTTCCCCGCGCGAGCGGGGGTGGCCCC # Left flank : CGAAAAATAAACTGTAGTTTACATTTACCACCAGTGCGTATTATGGCGCACTAAGCGGCCGTTTCCGAGCTTGAGCAGGTGAAGGCCGTTTGGTGCGCAGACGGGGGAACTCATGGTGGATCGGACGTTGCCTAAGCGCCGCTCTGCCAGGAGTTCTGTTGTTATCGTGCCCCTGATGTCCGCGGGCGGCTCCACTGCGGGTAACCGTGTTGCCGTTTGGCCGCCTCCCACCGGCCCACCCTGCACACGGCTCGGTGTCCCACCAACGTCACCGACGCCCAGTGGTGCGACATGTACCGCATTGACACCGGATTCTCGGGCCGGTGACCTGGTATTTCGCGTCCGTCTGCCGCTCGACAGGACACCCCATCGTCCGATGATGGATGCATAGATCGATGGTTGGTCGCCGTCACCGCGCCGGAACCGATTCGCAGCACCTCCACGCGAACAAACTGAATGAGAAACAACGACCAGACCTGTAACGTGCCTGGTCAGCAAGT # Right flank : AACAACGGGCTCAGCCCCCGGAGAATTGACCATGGAGTCTTCCGGGGATCACGCCTACAAGGTCCAGCCCGGTCACGATGACGTGGTGTGGTGCGCCTGCCAGCCAAGGGAAGAGGACGTCCAGATTGACCCATACCGACGCGAGGACCGGTCTGCTTCCGTAGACGTTGTCGCCCTCCCGCATGAACGGGCTGTTGATCACGATGCGCCTGCCTACCTCGCACCGGCCGTCGTCCGCATGCGGTGGAGGATGAGTTCGCCGCAGGGTTCGTCGTCGAGTTCGGCACGGTCGGGGCTTGGGCGGCCGCTGGTCAACTTCGTGGAAAGGAGTGTTCAGCTGGAGTTCGGCCCTGTGAACACTTCATGACGACCTCGATCACGCTCTAGTTCACCCCTGATGCCACCGGCCTGATCATCGGCACCAACCGACTCCATGAACTTCGAGTAGGGCAGGCGAGTCACTGGCCTCCGCCTACCAAAGTCGACCGGAGTGCACAGGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8398-7634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNYO01000061.1 Saccharothrix syringae strain NRRL B-16468 contig61.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8397 37 100.0 36 ..................................... CCGGTCCCACACCGCGTCGCGGCCGGCGGCCAGCTC A [8393] 8323 37 100.0 35 ..................................... GCTTCCAACTTGGCGTGGACGCTCGCCGCGGTACT 8251 37 100.0 37 ..................................... GATGCAGCTTGACAAGCAGTTACACGCAGTTGTATGC 8177 37 100.0 35 ..................................... TTCCTGCGTGTGCGATAGTAAATCGGGGCGGCGCC 8105 37 100.0 33 ..................................... CCGCGAGACCCGTGGCTTCGGGCCCTCGCCCGT 8035 37 81.1 33 .....A.C..........AA..G.T...........T CCGCGAGACCCGTGGCTTCGGGCCCTCGCCCGT 7965 37 89.2 35 .....A.............A..G.T............ TGGACCAGCGTCAGCGCCGTCTCGACCTGCGCCAT 7893 37 86.5 36 .....A.C...........A..G.T............ CACCGACCCGGCCGGGCACTGGGTGCCCCTGGGGCC 7820 37 86.5 37 .....A.C...........A..G.G............ GTGTTGACGCTGGCGACGCCGGAGCGGACACCGACGT T [7795] 7745 37 81.1 36 .....A.C....T.....AA..G.T............ TACCGGGACGTCGCGCTGTCGGACGACATCGCCGAA 7672 37 83.8 0 .....A.C......G....A..G.T............ | CG [7637] ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 91.7 35 GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Left flank : GCCGATCCAGGTGGCTCGCTGCGGGCGGTATGCGGGTACCGGGTCCACTCCTGCCTTGGCGGCGGCTCGGTCGAACCGCCACCCGCGTACCGCGACCACCAGGCGGGCCAGCCAGGCCGCTGGTCCCCGCCACGGCTTCACCCACACCGCCTGCACGAGCGTACCCAGCGCCTGCGCTGTGAACGCCGCGGCCGCCGCGCCGAGCAGCATGCCGACGGCGGCGACCGCGAGAGGCAGTCGGGGGAACGCCGAGACGATGTCGTTGCCGACTCGTACGACGTCCAGTGCGTTGTGGTGGCCGAGCCGGATCGCACACACGACCGCGACGACGAACAGCGCGCCAGGCAGGACGAGTGCGGTGACCCACCGTTCGGCGAGCTTTCCGCCCAGTCCCTGCAGGAACGGGTTCACCGCGGTGAACCCGTGGGCAGCATCGGCGAGTTGTCGAACAGGGCGCAGACCGGTGGGTGGCCCTCGTCGTCACGGCGGTCGTGGCGACC # Right flank : CCCGCCTTTCGACGACCGCCATGATGACGGCCAGCGTGGCACCGCCTCTCCTGGACCGGTGGGGATCGGAAGGTCAGGGGCGGTGTGGTGCTCGTCGAAGAACTTTTGAGGAGGACCTGTCTGTTGGTCACTTTGTGGTGCAGCACCGATATCGGGGCCGGTGCTGCTCGTGGTGGTCGGGTTGTGGGCGAGGTATTGCGTACCGGGTGTGGTGTACGTCGTGGGAGCACTGCTGTGGGAGCAGTTTGGGAGCCACTGGCGGCATCCAATGGCGCTGGACTGCTCCAAACTGCGTTCAACTGCACCCATGGCATGTGGTGGAGTCTTGTTTCCGCAGGTCAGAGTAGTTGTTGATCTACGTTGACGCAGTAGGGCTCTTCCGAACGTTCTCCAACTGCGCTCAATGGCACGAAACCGCAGGTAGCGGCGGTAAACGGCGCTGCTGACGGCTGGTGGAACGTGGTGACCGCATACGTAGCTTGGGTGCAGGCGAGGTGGTC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //