Array 1 78963-79988 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NAXE01000022.1 Streptococcus agalactiae strain NNA033 contig42, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     78963	    36	 100.0	    30	....................................	GATACAAGATACTGACGAAGGTGGCTATTA	
     79029	    36	 100.0	    30	....................................	TTTACAGTAGCACCATTTTATCAAGGAATA	
     79095	    36	 100.0	    30	....................................	TAGTGTTAAAAATTCGTCCATTATTATAAT	
     79161	    36	 100.0	    30	....................................	AAAATTGTATCGAGTCACAATTGTCAGAAA	
     79227	    36	 100.0	    30	....................................	TTAAAGAAAAGGCTCAAAAATTCAAACGCT	
     79293	    36	 100.0	    30	....................................	GCCAAAATATATTGAAGTGTGGCGTTATAA	
     79359	    36	 100.0	    30	....................................	AAAAGGAACATAGGGAAACGACACAGCTTT	
     79425	    36	 100.0	    30	....................................	TTTTTTTAATTTCGAAGTATCAATCATTGA	
     79491	    36	 100.0	    30	....................................	ACATGACAGGTAATGAAAAGCAAGTCTTTA	
     79557	    36	 100.0	    30	....................................	TCTGACACATAAGACTTTTTAACTTCTGGT	
     79623	    36	 100.0	    30	....................................	GAACGCCTTGATAGTCAACAAAAAATGTGT	
     79689	    36	 100.0	    30	....................................	GTCGTCACCTTGCCTTCTAACTTACACCAT	
     79755	    36	 100.0	    30	....................................	TTAAAGTTCATTACTTTCGAAAACTCTTTA	
     79821	    36	 100.0	    30	....................................	AAGAACAATTAACGGTAAAATCACAATTGT	
     79887	    36	 100.0	    30	....................................	AAGTGTGTTATCATATCTTCCTTTGGTTTT	
     79953	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGCCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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