Array 1 29890-29007 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDH01000003.1 Lactiplantibacillus daoliensis strain 116-1A contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29889 29 96.6 32 ............................C ATTACCAGTAAATGAATCAAAACTAGAAATAT 29828 29 100.0 32 ............................. TACATTCTATCAATGCTTACAGGTCATTCACC 29767 29 100.0 32 ............................. GGGTGGCGCTTTAGCTACCGAAGATCACCCTG 29706 29 96.6 32 ............................C CGACATTTGATCAACCTTTGCCAAATCTTGGT 29645 29 96.6 32 ............................C TTGCTGATAATTGCTTCCGAGCGCATTTTCAG 29584 29 96.6 32 .........C................... ATTGCGCATGGCATTTACGGCGTGACGCTTAA 29523 29 100.0 32 ............................. AACTACACCCTAGCATTGGGTGTCGGCAAGTC 29462 29 100.0 32 ............................. ATAGCCATTGTTCCATATTGTTGGGTAAACGT 29401 29 96.6 32 ............................C CTTTTTCTTGTTCTTCAGGGTTCGCGCTAGTC 29340 29 100.0 32 ............................. TGAAGAAAATTTAAGCGTCACACCGTAAATAC 29279 29 96.6 32 ............................C AAGCTAAGGTCATAGCTCATGAGAGAGTATCG 29218 29 100.0 32 ............................. AAGAAGCCACCCAATCACTCGGATAGCTTCTA 29157 29 93.1 32 ..........................T.C GTTTGGTCATATGGTTGAATCTTTAATGGACC 29096 29 89.7 32 ..........T..........G......G GTATGACGTAACAAATGGCAATGGAAATCGAT 29035 29 89.7 0 ...........A...A.G........... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.8 32 GTATTCCCCACGTATGTAGGGATGATCCT # Left flank : ACGCAGGATGAAATTATCTCAATTGGTGCAGTCAAGCAATCAGGGGATGGTCAAGTAGATCGTTTTTACAAGCTAATTCAGTGTGATCGAAAGATTCCTAAAAATATCGTTGAGTTAACTCGTATTACCTCTGAAATGTTGGCCTCAAAAGGGGTTAGTTTAAGTGAAGGACTACAGTCATTACAAAAATTCTTAGGTGATTTAGCGATAGTTGGCTATAACTCACATTTCGATGAACTATTTTTGACTAATAGCTTTAAAAAAGTTGATCAGCCGGATTTGGCTAATCAAATATTAGATTTGATGCCGATGGTTAAGAAGTCGGATAAGTTTTTGGATAATTATCGACTACAAACTGTATTGAACGAGTACAACATTGAAAATAAAGAGCCACACAACTCATTATCGGATGCTGAAGCCACCTTTAAACTAGCAACCAAGTTAATTGAAAACGGGGTTTTGAAAATTTAAGAACCGCGGTATAACAACACTTTTTTAGT # Right flank : TTATAGGTAATCGAGATTTGCAAAAAATTCATAGTATCTACAACGTATGTTATGTTCTGTGAAGTAATTTCTGTCCAGCTTTCGTGTGTTGTTCTAACGGAGAGGGATGTTGACATATTAGGAACGTAAAAAAATAGCATACTGAGTTTTCTGTTAAGAATATTCGGTATGCTATTCTAATTTTTTAATTATTTTCGATTTTTACGCTGTGGCTGCACGATAGTCAAAAAGTCTGCCAAGGCTTGTGGATCAGTCAATTGTCGGTTGCACTGATTACTATCACGACAAATATAATTACCTTTCTTGGTATAGGTACCCAATCCAGATGACTTAGTTGTTGATAGAAAGAGCGCAACATTTCCAATTGTTTGGCAGATTGCACAAACGCCTTTCACAGTTTCGGGTGCGAGTTCACCTTGAATACCGATTAACCGGTCCTCATAGGGTGCCACGAGATATTTCTTCTGATTGCCACCATCATTCCAGCCCAAGTAAGTTAA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41755-39712 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDH01000003.1 Lactiplantibacillus daoliensis strain 116-1A contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 41754 28 100.0 33 ............................ TGTGTCGGGCGCGTTTTCATATTTAATAAGTGT 41693 28 100.0 33 ............................ TCAAGGCGACCAACTAACGACAATCAATAATAA 41632 28 96.4 33 .......T.................... TTAATGCGACCTGTGATCGTGCGATCATTACCA 41571 28 100.0 33 ............................ TACCCACCAAGCATTTTTTTAACCAGAGGTAAA 41510 28 100.0 33 ............................ TATGCTTCTAAATTTTCAGAAATGCAAACAATT 41449 28 100.0 33 ............................ TTATGGTAAAGTTGAGTTAATATCGAGTTTTTA 41388 28 100.0 33 ............................ TAAATTAGGGCTTGAAATTATGAATAATGATAA 41327 28 100.0 33 ............................ TGTTTTTTCATTATCATGATCTAAAGCATTTCT 41266 28 100.0 33 ............................ TTAAAATAGCTTGTAAACGATAAAAATCTTTAC 41205 28 100.0 33 ............................ TATACGTCAACTGGCTCTTTATCAGGCATTAGC 41144 28 100.0 33 ............................ TAAGACAACAAATAACACAAGAATTGCTGTTGT 41083 28 100.0 33 ............................ CACGCAATCACACCATCGACGGCGTTAAAGATT 41022 28 100.0 33 ............................ TCGTCACTTTCAACATAATCTAAGCCACCTGAC 40961 28 100.0 33 ............................ TCATTGGTTGCTTGGCTTTGTGCGCTAGTAGCT 40900 28 100.0 33 ............................ CAATTCGATTAAGCACACACCATTGCAATACTT 40839 28 100.0 33 ............................ TGGCAATAAACCTGTCATGACGCAACTTGAATC 40778 28 100.0 33 ............................ TGGAGGCCGCCAAGAAGACACTTTCGGCCTATG 40717 28 100.0 33 ............................ TGCTACAAAGTCATTGGCACGTTCACCAGAAAC 40656 28 100.0 33 ............................ TAACGGCGTGTCTAAGGTGGCTAAGCTTCCGGA 40595 28 100.0 33 ............................ CAGCATTTTTAACTAGTGAGCTAAAAGTAATTT 40534 28 100.0 33 ............................ TTTAATACAGAGGCATTTTCAAACTTTGCCGAA 40473 28 100.0 33 ............................ CTCAGACCATCAACCCATGCAAGACGTTTTATC 40412 28 100.0 33 ............................ CGATGTTATTTTGGAAACAGCTCTTGGCAGCGC 40351 28 100.0 33 ............................ TCAATACGATAACAATGCGCACACTGACGATTT 40290 28 100.0 33 ............................ TATCAACAACTACCCAAATTAGAAAAAGTTCAA 40229 28 100.0 33 ............................ TGGCTAAATTGATTTTAAAATTCGAAAGAAAGA 40168 28 100.0 33 ............................ TTTTTCGTGTCTTATCTGGATTGAAAACTAATT 40107 28 100.0 33 ............................ TGACTGATTGGCGGACTCTTACCGATGTGATCA 40046 28 96.4 33 ......T..................... CGGTTAGGCCACCGGTTGTTTCGTTATAGCTTT 39985 28 100.0 33 ............................ CTGATAAAAATTTTCAGGCTTTAAAGAATGAAA 39924 28 100.0 33 ............................ TATATCCTTGGCGGCACTGAACCGTACCATTTC 39863 28 100.0 34 ............................ CTGAGGTAGTTAGTGACAACAGTATGACCTATCA 39801 28 100.0 33 ............................ CCATGCCACGTTGCCATTTGAGTTGCGTGTTAT 39740 28 75.0 0 ...T........C.G..G...T....TT | T [39723] ========== ====== ====== ====== ============================ ================================== ================== 34 28 99.1 33 GTGCTCCCCACATACGTAGGGATGATCC # Left flank : GGCCCACAAAAGTCAGCGCCCTGAAATGTTGGTCAGTACATTTGGTTTATAGGTCTGGAGCAAATCACTCGTTTGACGGGTGGTTATTATGATCGAGTTGTTTTCCGATTTGGGTGTGTAGCCATATTTGATGTGTGGTGTTAAACGCCAATTTTATATGGATAGCTGTTTTCTGAGGGACACCTGTTAAGCTGTCTTCGGTTATAAACTTATTACTGACTGGTACAGTCAGGTCTCCAGAGATAATTGTCATCACGGGTTGCCTTTTTTAGTTGTATTTTCTGTTAAGTTAGAAAGGTTTTTAATATGAGTATAGGAATTAGAATTTTGCTATTTTATCGGTATCTTGTACGACAATCTGATGTGTTGTTAGATTTGTGTATTGTTAAAGTCTAATTGCTACTGTATGCTTGAAATGTGATTTGAAAGTCAGGATGCAAGTTAATGTAAATTGTTGATATTGAAAATTTAAAATGCCGTTATATCAATGAATTTTTAGT # Right flank : TGTTAAATAATAAAATTGTGATAAATGTGGTCAAGGTAAATCTGGAAATGGCGACCAAAAAATAGCAAGCGTTAGTGATGAAAAATAAGTCAGTACATCATTGGGATAGGACAGACCTAAACTTTGAATTACTAAAGTTGTATAATGAGTTGTTTTGGAAACGCTTGCATTATGATTAGGATAGTCTTAAAGGGGAATGTGCTACGAAAACATGCCAGTGATGGCTAAACTTGTATGTCAGGAAGTGATAAGTTCACCATAAAATGTATTCGCTTACAAAAAGTGAAGTAAGTAAACGGTATTGTAATCTTACTCAAAGTACCAGTAAAAATTTTTTCAGCAGTTTTCGTATTTGTATAGCAATGGAACATCTTCATGTTTTAGAATTACTAAATAAACATAGCAAACAGTTACGAAGGGTAGGGAAATACTTATGGACATAAAATTATCTGAACAAGCATCTGTTTTATGGGCGAAAAAACGATCTGAAGATGGTCGAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACATACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //