Array 1 959413-960111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064663.1 Salmonella sp. SJTUF14170 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959413 29 100.0 32 ............................. CGCGAACAAATGCCCTTATCTGCTTAGTCTTG 959474 29 100.0 32 ............................. TGTGCAAACTCCATTACTTCGGAGAGCAAATG 959535 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 959596 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 959657 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 959718 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 959779 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 959840 29 96.6 32 ............................A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 959901 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 959962 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 960023 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 960084 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 968156-969345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064663.1 Salmonella sp. SJTUF14170 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 968156 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 968217 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 968278 29 100.0 32 ............................. CTTGGAACCATAAAAGATGGGCAAATAGTGCA 968339 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 968400 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 968461 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 968522 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 968583 29 100.0 33 ............................. TGGTGCCTGGAACTCATCCCGTGGTTATCCTGC 968645 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 968706 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 968767 29 100.0 32 ............................. AAAAATCTCCTTCACAACCTGGGGGGCTCTGG 968828 29 100.0 32 ............................. AAAACAATATTAGACAGCGCGCTATATAAAGA 968889 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 968950 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 969011 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 969072 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 969133 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 969194 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 969255 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 969316 29 100.0 0 ............................. | A [969343] ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCCCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //