Array 1 23233-24520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFH01000037.1 Pasteurella multocida strain 2969PM isolate swab isolate 1 contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23233 28 100.0 32 ............................ TACTAAAAGACTCCTCCTCCTGTTAGTTACGT 23293 28 100.0 32 ............................ ATTTATTTAGATGATTTTTTGAGGGGCGGAGA 23353 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 23413 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 23473 28 100.0 32 ............................ GTTCTTTAAAGAATACAAGCTCAACTGTATGA 23533 28 100.0 32 ............................ TTTGAGTAGTAAATATTATGGAATTCATTCAG 23593 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 23653 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 23713 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 23773 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 23833 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 23893 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 23953 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 24013 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 24073 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 24133 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 24193 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 24253 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24313 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24373 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24433 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 24493 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94874-91307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFH01000034.1 Pasteurella multocida strain 2969PM isolate swab isolate 1 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94873 28 100.0 32 ............................ ATTCAACAAGACTCAAGTACGCTTGTGGTGGG 94813 28 100.0 32 ............................ TGAGGAACTTGATGCAGCCCTTGATAAAAACT 94753 28 100.0 32 ............................ AATAAGAAAACACACCGTAACTACTGGGAAGA 94693 28 100.0 32 ............................ GTAAATGATGAAGGTTTGGGCAATACTGTTAA 94633 28 100.0 32 ............................ TTTATATGAACAAGCTAATGCGTGGCGTATTT 94573 28 100.0 32 ............................ ATTTGACTTTCTCTCAAAACAAGAGTAAATTT 94513 28 100.0 32 ............................ AGCTTAAATGCTGATATTCAGATGCACTTAAT 94453 28 100.0 32 ............................ TGAGTGTTTTTCAAGATACGCCTTGATACCCT 94393 28 100.0 32 ............................ TACATTGTTAAGTTAATTGCTTAACTTGTTGT 94333 28 100.0 32 ............................ ATTCGTAAGAGCTCGCACTAAATCAGCTATCA 94273 28 100.0 32 ............................ AACTAGGAGAACAAACATGAGAAGAATCATTA 94213 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTAAATG 94153 28 100.0 32 ............................ GTGCACTGTAAAATCATAATCTAGTTCGTAGT 94093 28 100.0 32 ............................ AACTAGGAGAACAAACATGAGAAGAATCATTA 94033 28 100.0 32 ............................ TTAATGGGTGTTGATGGTCGAAACTTTGAGTT 93973 28 100.0 32 ............................ AGCATTAAGTCAACATCTAGTTACTCATCTAG 93913 28 100.0 32 ............................ AATAGTCATCCTTTAGTCAACTCAAAGTCAAC 93853 28 100.0 32 ............................ AAACTTTTTCTCTTTTCTAGTCCAGAATGCTC 93793 28 100.0 32 ............................ TGATTCTTCGTCTGTATGTGCCTCTAATTCAT 93733 28 100.0 32 ............................ TTTAGTTTGACTTGTAAGCGACCAATTAACTT 93673 28 100.0 32 ............................ TTCCTGTTGTTCCTCTTGAGTATATACTTCTA 93613 28 100.0 32 ............................ GTACTTAGACGGGCTAGCTAACGAATCTTCCT 93553 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAAGGTGGTCTTT 93493 28 100.0 32 ............................ CTTTTGTGTTCTCCCTAACTCTTTCATGTAAG 93433 28 100.0 32 ............................ TCAGCTGATTCCACTTCGATAATAAATAAGTT 93373 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 93313 28 100.0 32 ............................ CCAGTTCGACGTGCTGTGAACTTAGGGTTTCT 93253 28 100.0 32 ............................ TACGTGGAACTAATGAGATTGACAGTCGTAAG 93193 28 100.0 32 ............................ GCAATGTTACTAGCGAATCAGCTTATGGTTAC 93133 28 100.0 32 ............................ ATTGAGATAAGGGGTCGTTAGGCATCACACCT 93073 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 93013 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 92953 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 92893 28 100.0 32 ............................ AAATTGTTAAGAACGTTATAAGCGTCTGTTTG 92833 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 92773 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92713 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92653 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92593 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92533 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92473 28 100.0 32 ............................ TGTTGTTCACTGGCACAATAGTAATGGTTCAT 92413 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92353 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92293 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92233 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92173 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92113 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92053 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 91993 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 91933 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 91873 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91813 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91753 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91693 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91633 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91573 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91513 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91453 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91393 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91333 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 60 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //