Array 1 95298-95073 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVMU01000005.1 Bacillus thuringiensis strain AFS093126 AFS093126_99_H5_Contig5_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 95297 29 100.0 36 ............................. CTTGCTACGCTTTCCAGTAACCATGTCGGGATCCAG 95232 29 100.0 36 ............................. AGCGCTACATATTTTGTATAGATTTCAGTAATTTGA 95167 29 100.0 37 ............................. GAGTACCTATGAGGTAGCTAATGACTCCCCCTCATTG 95101 29 89.7 0 .C..GT....................... | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 TTTAACACTAACATAAGATGTATTTAAAT # Left flank : TAAACATTGATGCGTGGGCATTTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACGATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATCTGTTAAAGTATCCATCTGTATTTCATCGGG # Right flank : CGTTTAATGTGTAATTTTTATATCAAAGAAGGACTTTGTTTACTATAAACGTAAGGGGATTTAAACAGATTTATAAAAATTATTAAACTAAGCTAAGAAAGTGAATTTTATCAATACGAGTTTTTTCTTTTACATATTAAAATGGAAGTACCCTTTCAATGTATACTGACTCCTTCATAAATTGTGAAGGGATTTTTTATTCAATAAATGAGTTTTACAAAAGATACAAAATGTTAAACTCATAAGAACCAGTGATATCATGCGTTTTTCTATGGTATTACTGGTTTTTTCCGCTATAAAATGAAAAGAAAAATATTGTCAGTTTAACAAAATATAGTTATAGTTAAAGTAAGTTTTACATATTATAGGTAACAGCATCGAATTAGGAGGTCGTGTTTTATGGCGAAAGGAGGACGAAAACCTGGAGCAAAAGAGCCAATTCGTTCATTAGAAAAAATAGAACAAATGAAAGATTGGTTATTACAAAATTCCTCATATCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 161-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVMU01000078.1 Bacillus thuringiensis strain AFS093126 AFS093126_99_H5_Contig78_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 161 23 95.7 25 ..A.................... CCGTTTAACTTTGCTTCTTGATTGT 209 23 91.3 41 C....T................. TAACGTTTCGCTTTGTTCTCGCCAAGCGCACGAAGTTAAAC 273 23 100.0 31 ....................... TCGGTTTGGCATGAGCCATACAGAAGCTGAA 327 23 87.0 43 .AG..T................. ACTAGCCTATCTAAAGTATTACTACTCTCTATATGAGTTTAAG 393 23 91.3 0 .............A......C.. | ========== ====== ====== ====== ======================= =========================================== ================== 5 23 93.1 35 ACTAACATAAGATGTATTTAAAT # Left flank : TAAACATTGATGCGTGGGCAGTTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACGATACATCTATTTGCTGGTAAAATTATGTTTAATATTCATCTTATCAGGTTTTTTCCGTATCTGTTAAAGTATCTATCTTTATTTCATCGGGGTTTGACA # Right flank : TGTGTTTACCCAAAGTATTAAACTAAGTCAAGAATGTATACTGATCCCCTTCACAGATTGTGAAGGAATTTTTTATTCGAAAGATGAGTTTTACAAAAGATACAAAATGTTAAACCTATAAAACCCATTGATATCAGCATATATGCATGAAATCAATGGGTTTTATATTTGGATATTTAATGGTGTGTTTTACAAATTATAAAAAGATGTAAACTTAGTTTTACTTTTTAAATATTATTTGTCCTAAAAATGACCAATGTTCATAAAGGTACTTATAATGATTCACTCTCTAATTTACGTACTAATTTTCATTAAATGATATAGCTGAAAAATAGCAGATGAACTATACGGGGAACTAACAAATTATTGAAGGATTTCTTTGACATTTAAGAAATCCTTTTTATATTACATTTAAAAACGCCTTTATAAAAGAACGTAAGTTCGTGTATAATAAGAACAAACGTTCTTTAACTTTGGGAGGAATCACGATGTATGACTAT # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:-0.09, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //