Array 1 929-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNM01000003.1 Cronobacter malonaticus strain cro1410A1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 928 29 100.0 32 ............................. CGTTTTTTCATCAACTTACAATTGATTAAGGA 867 29 100.0 32 ............................. CCTGTGCGCATAACGCCGTAGTGATCAATGAT 806 29 100.0 32 ............................. AAATTCTCCAACGCTTCTCAGGTGACGTCACG 745 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 684 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 623 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 562 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 501 29 100.0 32 ............................. CCGTCCCAGGACATCCCCTCGGTGTGAGACGG 440 29 100.0 32 ............................. GTGCCGAATTACTGCGGCTGGCGCGGCTAGGC 379 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 318 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 257 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 196 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 135 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27503-26620 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNM01000003.1 Cronobacter malonaticus strain cro1410A1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27502 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 27441 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 27380 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 27319 29 100.0 32 ............................. AATTAAGCCGCGAACAGGCGATACTTAACGCA 27258 29 96.6 32 ............A................ CGCACCACTCTTCAACACCTACGGCCAGCGCC 27197 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 27136 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 27075 29 100.0 32 ............................. GACTTTTAACAGGGGCGATTGCTCATCCGATA 27014 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 26953 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 26892 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 26831 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 26770 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 26709 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 26648 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //