Array 1 12759-11266 **** Predicted by CRISPRDetect 2.4 *** >NC_018018.1 Bernardetia litoralis DSM 6794, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12758 37 100.0 34 ..................................... TATGATACGACATTCTTTTCTCAAACTTATCCTT 12687 37 100.0 38 ..................................... TCCACGCTCTGTTTTCGCAAATGAAATGGTTGCTTCTA 12612 37 100.0 36 ..................................... TTATCTAAAGAGTACAAGTTAAGATATTTTATTTGT 12539 37 100.0 35 ..................................... CAAAAATGCTGAATTTTAACCGACACTTTTTGAGT 12467 37 100.0 37 ..................................... GTGCAACTTTAGAGGTCGATTTCTGAGCATAATTTAT 12393 37 100.0 37 ..................................... ACTACTACCTTAAATTTTTTTATACAAGATTTTTATT 12319 37 100.0 35 ..................................... TATAAAAGGTTAATATGTTAAGATAAAAATCGGGA 12247 37 100.0 37 ..................................... ATACCGTAAGGTATGTATCATCCTATTGGATATGTTT 12173 37 100.0 36 ..................................... GCACTGCCTCCACTTGTTTGCGCAAATTGCCCTTTT 12100 37 100.0 37 ..................................... TCCATTTCCTCCAAAGCATTCAAGTATTTCAAAACCT 12026 37 100.0 36 ..................................... GATTTAGTTTATTTTTGAGTTTTTATTATAGGTTGC 11953 37 100.0 35 ..................................... TGCGTTTTCTGCTAAAATACGTTTATGATATAATT 11881 37 100.0 33 ..................................... CAGCAGCAGCAGTTGGTATTTTTGGAGACAATG 11811 37 100.0 34 ..................................... TGAGTTGAACAGTATCCTTTGTAACTATTCCATT 11740 37 100.0 39 ..................................... TTTGCTAAAAAGCACTGTTTAAATCTATTCATCTTTTTT 11664 37 100.0 36 ..................................... ATGTCCCTAATTGCGTGTAAAGCGAATTTAATTTAC 11591 37 100.0 35 ..................................... CTACTAATGTATAACCTTTTAAATTAGCACGTTTC 11519 37 100.0 37 ..................................... TTGATGGCTTTGTATCTGACAGATATGTTGAAAATGA 11445 37 100.0 33 ..................................... ACTTCTAATTTCGTCTTGATACATTTTAATTTT 11375 37 100.0 36 ..................................... TCAAACCCTTCATCAACTCTGCATAAAACAAGTTTA 11302 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.9 36 CTTAAAAACCATATTCCATTAAAACAAGGATTGCGAC # Left flank : TTAACCTTATTTGTATGACTTATTTAATTTTGTATGATATTTCTGAAGATAGAATCAGAACTCATATTTCCAAACATTTGGAAGAGAGGGGGTGTCGTCGTGTCCAAAAATCAGTTTTTATGGCAAAGATGAGTATTGAAAAATATCATGAAATAAGGGATTATTTGCAACAGATTCAAGATGAGTATGAAAATGATGATACTATTTTGTTTATACCAATTTCTCAACAAGTACTAAGAGAAACTTATATGATAGGTAATAATATACCTTTTTTGGATGCTGTGGACGATAAAAAGGTACTTATTTTCTAAAATGGCAGAAAAAAAGCTAAAACCTCGTTTTTAGAAATTTTGAGGCAAAAAAAAAGGCTCTAAAATTTTGAAAATTGAGTTTTAGAATGTACCTTTGGGAAAGGTTGAAAGCAAAAAAGTGCTTTTAGAGAAAAATAAAGACTGTTTTTTGATAAAAAGTAATGATTTTGACAAAATGTCAGTGTTGGT # Right flank : ACTAAAAGCAGGGTTTCCTTCACCATCAATTTCATAACTTTACAATTTCTCATTTCTTAGGCAAACTATTTGTTTATAACTTTTTTGATAAATCATTGAATAAACTAAACTATCTTTTCTTATGAACTTTCAAAAAATAAAACTCTATTCTCTTTCTTTATTTCTTTCAGTTGCTTTATTTTCTTGTGAAGATTCAGAAACAGAACCCATTCAAGATACAGACAATACCGATTCAGAAATTATATTTAATGTAAATGGACAAGAATTGGTGACTTTAGTGAATAAATATAGAACAGAAGGTTGTACCTGTGGAAGTGATGTGATGCCAGCCGTAGCCACAATTACTTGGAATGAAACACTTGCAAAAACAGCTTATTTACATAGCAAAGATATGAATGACCAAGATTATTTTTCTCATACAGGAAAGGATGGCTCAGATACTGGAATACGAATGGAAAGACAAGGTTATGATTGGAGAGCTTATGGAGAAAATATTGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAAAACCATATTCCATTAAAACAAGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 205432-206414 **** Predicted by CRISPRDetect 2.4 *** >NC_018018.1 Bernardetia litoralis DSM 6794, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 205432 37 100.0 34 ..................................... TTTAATATTTTTTATAAAAAAACACCTAATAAAT 205503 37 100.0 36 ..................................... TTCTTTCCATAGTTCTAGTATCTCAGAATCTATTTC 205576 37 100.0 33 ..................................... TTGACATAAATTATTGTTATTTAAATTAAATAT 205646 37 100.0 33 ..................................... GTCTTTGATACCTTTTACTTTTAGCATATACTT 205716 37 100.0 38 ..................................... TTCATAATATTTGTTTTTTAAAAGGTTATTATTAAAAG 205791 37 100.0 38 ..................................... TTTACAGGAGAAAGTATTGTTCCTGAATACACAATAAC 205866 37 100.0 34 ..................................... CTCGTTCTGCGCAATTGCGCATGCGCAGTTGTTA 205937 37 100.0 35 ..................................... GTACTTTAAAACATATAAATAGTATCCTCAAATCT 206009 37 97.3 38 ............................A........ CTTTACATCAAAGGCATTGTCATCCAATAAATATTTTT 206084 37 100.0 38 ..................................... TGGTCTACTAGAATTAGAAGATGATATTTATAATGCAA 206159 37 100.0 34 ..................................... CTTCTTTTAATTTTTTCAATATGAGTTGCTTTTT 206230 37 100.0 38 ..................................... TTATGGATACGGTCTTTGTAGTACGAACCTGTCACTTC 206305 37 100.0 36 ..................................... TGAATTCGGAACTGGTCTAGGGAAAACTATCTATCT 206378 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.8 36 ATTGAAAAGCATATTCCATTATAACAAGGATTGCGAC # Left flank : TTGCAGAATAGAAATGATGTTTTTTTATTAAAAATTTAACGGATTTGTCGTCGCTCTCCAATAGTAAGAAAACTACTGGAGTACGACGACATACATAAAATGCTTTAAATCAAGCACTTATACCTTTTTTTATTCTTATTTCAAAGAATAATTTTTCGGACTTAGACGACATCATTAGCTCACAGTATTCAAAAAGACACTTTTTATAAATTTATAAAAAATGATCTAAAGGATTCTGTTCTACTCCAATTACTTTCCTATTCATTCCAATTTTCTGAAGGTGTTTGAAAATAGATGATGTAATACAAAGAAACAACAATAATTTCTAAAAACTGATTTTTAGAAATTATTGAGTGTAAAAAAGAGATTTTATTTTTTGAAAATTGAGTTTTAGAATGTATATTTACAGAAATATAGATTTAAAAAAAGTAGCTTTAGAAACTTTAAATAAACTTTTTTAGTCTAAAAATGAGATGATTTGACAAGTTGTCAAGTTCGCT # Right flank : CTCAAAATAGTGTCAATAGTGTTCAAATTAACCCAAATACTTTTTTTAGTTATCTTTTTTTTATTATAATTAGTGTAGAATTTAATTACTGTACCCTACCTTTTTTTAAACACAGAGTTCATAGAGGTACATAGAGGAGGAAGAAGAGTAAATTTACATAAACTCAAGGTTGTACATCAAAAGACATAGGAAAAGTAGAAATACATGAAAAAGCTATGTATTGTAGAAAGAACCATCACTTGGGTAAAGAATGACAAAAGATTATGAGAAAAAAATAGAAAGTGCCAATGCTTTTATATTAATTGCAAACCTCAGAAGGTTAGCTATGAAAATTGAATTCAAACAATTTTTAAGTATCCTCACTCTTTTTTATGAAATGACTCCTCTTATATATAAATAAAATAGTTGTAGCAAACTAAAAAAAACATTAGCTTTGCCAAATCGTTAGGGGTGCTTATAAATAGCTGAGATTATACCCTATGAACCTGAGATGTTTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAGCATATTCCATTATAACAAGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 1679373-1678085 **** Predicted by CRISPRDetect 2.4 *** >NC_018018.1 Bernardetia litoralis DSM 6794, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1679372 37 100.0 37 ..................................... AAGTGTAAAATAAAACTAAAAATGTTTTATTTTCCTT 1679298 37 100.0 34 ..................................... ATAACTGAGGCTTTTGAAACAAGATTTACGGAAT 1679227 37 100.0 35 ..................................... TAGGTAACGCAATAATGGTAGCTTTTGAATGAACT 1679155 37 100.0 33 ..................................... TACAAATGGATTCGGTGCGCTGCACCTGAAAAA 1679085 37 100.0 37 ..................................... AGGAAGTGCTCCTTTTGTATCTCCTGCTTCAATTTTT 1679011 37 100.0 37 ..................................... CTAAACATCGAAACAATCATCAACTTAGCAAAGTTGA 1678937 37 97.3 33 ........T............................ TACACTTTTACCTTGGTAGTTGCTTAAATTAGC 1678867 37 100.0 38 ..................................... TCGCAACTATTTTCTGCGACCCTCCATTATGAAATACT 1678792 37 100.0 37 ..................................... GCCAATTCGCACCTATGTGGTCAAACAATTTCAATAT 1678718 37 100.0 36 ..................................... TAATCCGAAGGCTATTGAAATAACGAATCAAAGGTT 1678645 37 100.0 37 ..................................... TCGTGACAGCGTCGTCCTGCTGCAGCCTGTAACTCAT 1678571 37 100.0 40 ..................................... TATCATTTCCAAAACCGTGAATTGTTGTTGGTGGCTTTGA 1678494 37 100.0 36 ..................................... TGACTGCCAATCAAATAGCGTGGCGCATTAGGCGTT 1678421 37 100.0 36 ..................................... TCGAACAGAATATAGTTTGAATAAGGGCGCACAGCC 1678348 37 100.0 37 ..................................... AGTACGAGAGCATAACTGCTCCCATGACTTTAAGCTC 1678274 37 100.0 41 ..................................... AAAGGCTACTGGGATAGTTTGTTGTAATCCATTAATCTTGA 1678196 37 100.0 38 ..................................... TCAAAGTCAAACGTAGCAACTGTGTCGTACTTCTTATT 1678121 37 86.5 0 .............................C..ATT.T | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.1 37 CTTAAAAACCATATTCCATTAAAACAAGGATTGCGAC # Left flank : GCGGCACTATCAGTACACCTTCAAAGGTGTCAGATAGTTTGTTTCTAAACTGTACTGACACTTTTGAACGGCTTTAGCCCTCAACGAAGTTAAAGTGTCTGACAGATTTTTATTCTAAAACCAAAATTAGTTCAGTATATACAAAACTGACTAGTTTTCAAAATAACTAGTCAGTTTTTATAAAATCTTATTTTTCTGACCATATTTTTTATACCAAAAATTGAAATAAATCAAGTTTGTCATTTAGATAATCTCCATAAAAAATTGCTTGATTGTTATTTTTAAGGCTTGTAAAAAGATTTTTTTGCTAAAATGGCAGAAAAAAAGCTAAAACTTCGTTTTTAGAAATTTTGAGGCAAAAAAAGAGCTTCTAAAATTTTGAAAATTGAGTTTTAGAATGTACCTTTGGGAAAGGTTGAAAGTAAATAAGTGCTTTTAGAGAAAAATAAAGGCTGTTTTTTGAGAAAAAGTAATGATTTTGACAAAATGTCAGCGTTGGT # Right flank : CTTATCAAAAAAGCTCCTTAACATCTTCAATTTCTATTTTGAAGTGTTAAAGAGCTTATAAGTAATATTTTATTTTAATCAAAAATTTGTCAATAGTTTAATATTGAAAAGTCCTATAATTTACTTGATTAAATATATTTTCTGTATTAATTATTTATACCAAAAATTGAAATAAATCAGGTTTGTCATTCAGATATTCTCCATAAAAATTTTGTTCTATCATTCTTTGCTTTAAGGCTTGCAAATCATTAGCATTTTTCAATTCTATTCCGACCACAGCAGGTGCTAAATTTCGGTTGTGTTTTTTTGAATATTCAAAGTGCGTAATATCATCATCCACTCCCAATACATTTACAACAAACTCCCTCAACGCCCCTGCTCTTTGTGGAAAACGAACGATAAAATAATGCTTCAAACCACGATACAATAAAGCTCTTTCTTTGATTTCTTCAGTACGAGTAATGTCATTATTGCTTCCACTAATCAAACAAACTACATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAAAACCATATTCCATTAAAACAAGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //