Array 1 1871788-1868409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028299.1 Acidovorax avenae subsp. avenae strain QH1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1871787 32 100.0 34 ................................ ACGGCAATGGTGTATTCGCCGCAGGCCTTGATGC 1871721 32 100.0 36 ................................ GCCTGCAGAACGATTCCCTTCGGCCCCACGATGTTC 1871653 32 100.0 34 ................................ GGCGTGGACAGGATGTCCCGGATGGACTGGCGCA 1871587 32 100.0 35 ................................ GGGAACGGCCGCGGCACGCTCAACCCGGCCGCACA 1871520 32 100.0 35 ................................ CCCCGAGTCTCGGCCGGCTGCTCGCCCCCGCCCCA 1871453 32 100.0 36 ................................ ATGATGGTCGGCCGGGCCTGCCCCGGCTGGTGTTGA 1871385 32 100.0 36 ................................ GTGATGGGGCAAATCTGGCGCTTGCCGAACTGGAAC 1871317 32 100.0 35 ................................ CGAAGAACGTGCCCTTCGACTCGGCCTCCATGAAT 1871250 32 100.0 34 ................................ TTCTCCCCGCTGGCCTTGTCGGTCCACTTTTCCG 1871184 32 100.0 35 ................................ AGCATCACCGAGAGCACGCTGCGCGAGCTGGCGCG 1871117 32 100.0 34 ................................ ATGAACGCCCATCCGTGGGTTACGAAGAGCCGTC 1871051 32 100.0 35 ................................ ATCTCCTCCCACGGCGGCTCGCAAGTCCGCATCAA 1870984 32 100.0 34 ................................ TATGCCGCCGTTGAGCAGGCGCGGGCGTCTGTAA 1870918 32 100.0 36 ................................ ACGGCCGCGAAGGGCTATTCAGCATCGGGGCCTATC 1870850 32 100.0 35 ................................ GCTTCATGAAACGCGAGTTCGGTACGCGCATGGTG 1870783 32 100.0 35 ................................ CGGGTAGTGGCCGGCGTCATAGGCCGCCTGACACC 1870716 32 100.0 36 ................................ CTCCCGTGGGATTGCCTGGATGAGCCCCCGGACGTG 1870648 32 100.0 35 ................................ AGCCCGTCGCCGTCGTCCTGGACCAAGGCGAAGTG 1870581 32 100.0 35 ................................ TTGCACAGCATGCCGAGGGCGTCCACGACAGCGGA 1870514 32 100.0 34 ................................ GACCTCCTGAGCGGGGAACAGGTCATCGAGCTTC 1870448 32 100.0 35 ................................ ATGCCCATGAAGCCGCCGCGGCCGGCCCCGGCCTG 1870381 32 100.0 35 ................................ TGGTTCGAGACCGGCCTACGCCCCGGCGAGCTCCA 1870314 32 100.0 35 ................................ AGCAGCAATCGTTCGGGGGCAAGGTAGCGGGCCAG 1870247 32 100.0 35 ................................ CGCGCAAGTAACCGCGCAAAACCTCGCAGCGAAAC 1870180 32 100.0 35 ................................ CGCTACCTGGGCCAGGCTGTGCCCAGCATGCACAC 1870113 32 100.0 35 ................................ CAACAGGCATACCCTGGATACACATGCGACGTTAT 1870046 32 100.0 36 ................................ TCGATCTCCTCCAGGATCTCGGTGTACTCGGCCAAC 1869978 32 100.0 34 ................................ TTGCGCGACCTTGAGCGGCAGGGCGCTGATGGAT 1869912 32 100.0 35 ................................ AAGGACGGTCCGCTCGCGGAACTGGCCGAGAGCAT 1869845 32 100.0 35 ................................ TTCTACTCTTCTCAATCCCACTCAATACCAAACAC 1869778 32 100.0 35 ................................ AGTGCTCATTCCCTGGTTACCCAATTTCAGCGAGC 1869711 32 100.0 34 ................................ ACGTTCGTGATAATTCATCCATCGCAGCCCCACC 1869645 32 100.0 35 ................................ ATCCACGATCCAGAGGATCAAAAACGGCAAGGGCT 1869578 32 100.0 35 ................................ GTGTACGCCGACTACTTCCCGGCCAGCCTGCGGGC 1869511 32 100.0 35 ................................ AAGACTGTCTCCGGGGACCTGCTGGAAGAGCTGAA 1869444 32 100.0 35 ................................ GTCTTCCACGAGGGCGGCGCGCAGGCCCGGGTTCC 1869377 32 100.0 35 ................................ GTGTAGGGCGGCCCGGAACCGTTGATGCGCCAGTT 1869310 32 100.0 38 ................................ CTGCCGCAACATCAAGGCGAGCCTGCAGGGCGACGTGG 1869240 32 100.0 36 ................................ CTGCGGGGTGGACGGGTACTCCCGCCACATCTGGTC 1869172 32 100.0 35 ................................ GCGGCAGCAACCCACGGCACGCTGAGCGGGCTTTT 1869105 32 100.0 35 ................................ TTGGGAGACGCTCGCCGCGTCCGGGGTCCAATCCT 1869038 32 96.9 34 .....................C.......... AAGGTGCCCAACCCGGGCGGGGGCTTCGACATGA 1868972 32 96.9 36 ...........C.................... GGCAGCGTGATCTTGATGGCGCGGATGGCCCGGGCC 1868904 32 100.0 35 ................................ CGGATCAGCCTCAGCGAAGGCGATAATTTGTGCAG 1868837 32 100.0 34 ................................ GGCGACTACGTCGATCCGGCCACGCTCACGGACG 1868771 32 100.0 35 ................................ TGCGACACCGGCAACGAGCACGAAGCCACGTACGC 1868704 32 100.0 36 ................................ ATGCGCAACGAACTCAACCTGGGTAGCACCCTGGCA 1868636 31 93.8 33 .........A......-............... ATCAACGGCGAGATGGGCTGCGGCAAGACCACG 1868572 32 90.6 35 ............A...........A.....G. TTCTTTACGCGTGGATTAGTGGCGACTTTTGCGAC 1868505 31 84.4 34 .....A...C...G.T..........-..... TACGCCCTTACAAGGCGTAGGTCGGCAGCGCAAC 1868440 32 68.8 0 .......A...CAT.AA....C..AC...G.. | ========== ====== ====== ====== ================================ ====================================== ================== 51 32 98.7 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATTTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAGCGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGCCCCCCATTCCTCTCTTCCCTCCTTCTTTTAGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGTGCAAGTGGTTGAGAGCAAAGGGAATTTATCCTGGGTGCCGGACGGGGCGCGCACGCCGCGGGTCGATGGGGACCAAGTTCGCGGATGTGCGAGGGAAATGGCTGGGGTGGCGCGGGTTTATAAAGAGGCC # Right flank : AACGAGAGGTGTTGCGGCAAGATGTCCGCCGACGATCCGCGTCCGTGCGTGCATGAGTGCAGCCAACCGCCCGGCCGGCCCAGCCCTACGCATGCTCGCGAACTCCTACATCGCAGGCCCATTCACACCCATCCGCATCGCCACCCGCCGCTCCACCGCCAACCCATGCGCAGCCTCCACATCCATCACCCCCTGCAGCCGCGGCCCCGGCGGTGACACCGGGCGGAACCCCAGCCTCGCATAGGCCGGCGCGCTCCACGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGTCTCGTGCCGATGCCCCTGCGCAGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGCCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCAGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4530355-4533000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028299.1 Acidovorax avenae subsp. avenae strain QH1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4530355 32 100.0 35 ................................ TTGGCCATAACTGGAGGGAGCGTCTGGCCTCGCTC 4530422 32 100.0 35 ................................ ACTGCCTCCCGCATCTCATCTCGAAGAACAGTCTG 4530489 32 100.0 33 ................................ GACACAGCGGCAGAGGAGTTCATACGCGAACAC 4530554 32 100.0 34 ................................ ACCAGCTCGGCGCGGGACTGCCTGAACGGATCGC 4530620 32 100.0 36 ................................ ATCCGCGAGGGCATCCCGCGCCGTGTGGAATTCAGC 4530688 32 100.0 34 ................................ GAAATCGAGTTTCCGGCGTCGATGAAAAGCGAGG 4530754 32 100.0 36 ................................ ATCGAGGGCTATGCACGCATCACCGGCGAGGCCCGG 4530822 32 100.0 33 ................................ AGCTCGAGAGCGTCGTGCAGCGCTCGGGCATGT 4530887 32 100.0 36 ................................ GAAGGTGGCGCCTCCGCGCTGGATGCGGCCCTGCTC 4530955 32 100.0 35 ................................ ACCACCTACACGGCGGCGTGCGACGTGGCACCGAC 4531022 32 100.0 37 ................................ AGTAGAACCGTACACCATGGGGCAATGCCCCATGCCC 4531091 32 100.0 36 ................................ CACCACTCCACGACCTCTGGCAGCACGAGCATGGCC 4531159 32 100.0 33 ................................ ACATCAGCAAAGAAGAACCCGGCCTGTACCGCG 4531224 32 100.0 36 ................................ TCGTGGGCGTGCTGGCTGTGGCCCTGCCGGCCACAT 4531292 32 100.0 35 ................................ GTGCACGTGCACGATGCGCGCCGGGCGGACAGCGC 4531359 32 100.0 33 ................................ AGAGCGGAATGAACTTCCTCTCCGGCTCGGGTG 4531424 32 100.0 33 ................................ GATGGGCAACCGGCTTTTTCTCTACCGCCTGCC 4531489 32 100.0 34 ................................ ACCTACAACTGCGCGGGCACGCGAAGTCCATCCG 4531555 32 100.0 37 ................................ ACGCGGTTCGCGGGGTGCAGCAGGTGGCGCGCGCCCA 4531624 32 100.0 35 ................................ ACCAGCGAGGACATTCCGGCCAGCACCGGCAGCGC 4531691 32 100.0 35 ................................ GATGCGGTGGCGGCGGCCGCGGACGACACGTCCAA 4531758 32 100.0 34 ................................ AAGTTTTTCACCGGCCTACGCACCTCCGAGAGCC 4531824 32 100.0 34 ................................ ATGCTGGCTGGCGCCCCTATCTGGGGAATCGTGG 4531890 32 100.0 37 ................................ GTTCCTTCATCCGGGTTGTTCGCCAGAACATCGTGGG 4531959 32 100.0 34 ................................ ACCAGCTTTTCGGCCCGCGTGCCCCACAGGGCGG 4532025 32 100.0 35 ................................ ATCGGCCTCGTGGGAGCAGCACGATGAAGCGCCGG 4532092 32 100.0 36 ................................ GACGCCGTGTACCTCATGGCCCTGAACCCGAAGGCC 4532160 32 100.0 34 ................................ CCGGTCACGGCGATCGGGTCCACCTCCCAAACGC 4532226 32 100.0 37 ................................ GCCAGCAACCGGATCGTCGGCGGCGGACTGCGGGGCA 4532295 32 100.0 35 ................................ ACGAAGGCGCGCCGGGCCGGGTCGCTGACCTACGT 4532362 32 100.0 33 ................................ ACTCCCACCAGAAGATCGTGGCTTGTCCGGCCG 4532427 32 100.0 35 ................................ AAGTTCCGCGCATCCAGCCTGGGCTGGATCATGAC 4532494 32 100.0 36 ................................ TGCAGCCACACCCGCGCCGGCCGAAGACAGCCGGCC 4532562 32 100.0 37 ................................ AAGGGCATCGCATCCACACCGAGCACCGACCGGATGG 4532631 32 100.0 35 ................................ ATCCCGTCGTTGAGCTTGAGAACGGCCGCCAGCGG 4532698 32 100.0 36 ................................ TGCCACTACGGCCGTCGGCGCATGCCGCGCGCGAGC 4532766 32 100.0 37 ................................ TATGACGGCGACGGGCGGCCCGTCGAAGCCCCGGCCA 4532835 32 100.0 35 ................................ TGCGAGACCTGCGCCTGCATCCGCATGGCGGTGTG 4532902 32 100.0 35 ................................ TTCATGCACTCCAACTGGTGGGCTGTATCCCGATA 4532969 32 93.8 0 ....................C...A....... | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 99.8 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CTCGTCAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAGGCCCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAACGACTGGCAGCGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCCCCTCCTCTTCATTCCTGCAACCATCCGGCGCGAACCGGAAGCAACTGCCTGCGCCCAGGGGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGGATTGTGGGACCGTGAGCGGCTTTGCCCGGCAAAAGCCCCGCTCTGTGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTAGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACTCCCCGCCTATCGCCCCAGTCCGACATCCCCCCACCCCTCCTCCCCGGACACTGCCTCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGACTCCGCCACCCCCCTCACCGCCGAACGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGGCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //