Array 1 6213-5635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLK01000070.1 Rothia mucilaginosa strain 329_RMUC 157_6242_152659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6212 29 100.0 32 ............................. CGTGCTTCTGAGCAGAGTCAGTCTCAGGGTCA 6151 29 89.7 32 G..C........................C AAGGCGGCATTCGGCATGGGTGGAGACGCAAA 6090 29 89.7 32 G..C........................T GCGTTGTCCGTCTGGATATGGTTCAGGTCGGT 6029 29 89.7 32 G..C.....A................... AAGGGAGGCAATCAATGGGCCGTGTTGTAAAG 5968 29 100.0 32 ............................. ACGGCACACCCCGACTTCTGGACGGAGCTCGT 5907 29 96.6 32 .............T............... GGCAGGGCTCCCTCTGCTCCCTCCCTCGCCCC 5846 29 89.7 32 G.........T.................C TTGGACGCGGCACAAGACCTGGAAGCCGCGCA 5785 29 93.1 32 G...........................C TTCTGGCGCATACGCTCGAACTCGTCGCTAAA 5724 29 100.0 32 ............................. AGGAGGGTCTTCTCGTACGAGAGCTCTTTGGC 5663 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.5 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GTGCTCGTCAATATGGGTGAGAACCTCGA # Right flank : TATATCAAGGGTAATAATGAAAGAAACTCAACGTATTCCCCGCACCCGCGGGGCATAGGTACGGCCCCTCGGCCCGCAGCAATAAGCTGCAGGTCGAGGGGCCTCCTCATGCATTAGCTGATAGAAAGGTCAGCCCTAGAAAACTAGGAAACCGCCCCTTACGCCACCGCCAGGGTGCCCTTGGTTGCGGTGCCGCTTCGGGTCCACAGCAGGAGCGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACGTTCGCGAAGTTGCCCTGGGTTAGCGACTTCACGCACTGCACTGTGTTGTACAGGAACCAGAATTGCCACTGCATCGTGAGCTTGAGCGCGTTCAGAATGTTTGCTGACAGGGAGAGGCCAAACACTACGGTCGTGATCCAGAACAGGAACGAGGTCTTGCCGCCGTAGCCAATGTAGTTCGCGACCAGGGAGAACGCGAACGAGCCCACCACAATACCGCTAATAATCAGCTGACCCTTAGC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : TGCTCCCCGCGCGAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 28038-28799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLK01000014.1 Rothia mucilaginosa strain 329_RMUC 33_28834_794271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28038 29 89.7 32 G...........T............A... TACCTCCCGGAACCCAGCTGGCAAATCACGGG 28099 29 96.6 32 .............A............... CGTTGCGGGCTTTCGGGGTCGGTGTTTTGTGC 28160 29 100.0 31 ............................. TGGCGCTGATGGGCACTGGTGCGGCTTCCTG T [28188] 28221 29 96.6 32 .........................A... AACCCGCCGGTACAGTCCCCCCCGGAGAGTCT 28282 29 82.8 32 G........A..TT..T............ GATTCGGTGGAATTGCGCACCGCAGCGCTAGT 28343 29 89.7 32 G.........T....A............. AACCCCACCTTTGATGAGGTCAAGCTTCAAGA 28404 29 93.1 32 G.A.......................... AACGGCGACCGCTGGAACGTCGAAGCGGTAAA 28465 29 96.6 32 ...................T......... GGGGTGAATCTTCCTTCTCGCCCCGCTAGTGT 28526 29 96.6 32 ..........T.................. GACTGGATGGATTGGCGGGAGAAGAACCCGCG 28587 29 100.0 32 ............................. GAGCTTTCGGATTTGGCGTTGACTTTGAAGCA 28648 29 89.7 33 G..C........T................ AATCAGACCTATAGGGCTTTCGTCGCGCGCCCA 28710 29 100.0 32 ............................. AAGCCCGCGAAGAAGCCCGGCGGGTACTCTCT 28771 29 93.1 0 G..C......................... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 94.2 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CATACTCGCCCTGGTGAGAGCGTTCATTATGGTCGTCTGTTGGCGAAGCTGGAGAACGGTCAGGAGTGGGCTTTCCGTCTTGCGGCGAACCCGGTGAAGCGTCATACGAATCAGCAGACGGGTAAGCGTGAAGTGTTCCCGCACGTGACTGTTGCGCAGCAGCAGGCGTGGATCCGTGAGCGTGCTCCGCAGTGGGGGTTTGAAGTGATTCCTGCTGTTGAGGGTCAGGATATTGAGGAGTGCCCTATGGTTTCTTCTCGTCAGGACCTTGCGTTTGCACGTCGTAACGCTGAGGGCAAGGTTGGTAAGGTGAGTCACCGTAAGGCTCAGTTTGATGGTGCTCTTCGCATCACTGATGTTGAGCTGTTCCGTAAGTCTCTGCTCGCTGGCATGGGCAGGGGTAAGGCGTACGGTATGGGCCTTCTAACGTTGGTGCCTCTGTCCCGATGAGTGCCGTGGAGTAGAGGGGGAGCTAATCTGCGCGGGACAATGTTCTGCAT # Right flank : CCGTGCTCGTCAATATGGGTGAGAACCTCGAAATG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //