Array 1 2947-2631 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEL01000001.1 Pseudoalteromonas piscicida strain S1607 S1607_S15_L001_R1_001__paired__contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 2946 29 100.0 44 ............................. ACTGAGTATGTCACAAAAGAATTACCTGAAAGCACATAGTTTCT 2873 29 100.0 43 ............................. AAACAAATCAAAAACACATCCTAAAATACACCAAGATGTTTCT 2801 29 100.0 42 ............................. CTTTCGTTTAACGATAGCGGAAACGTAATCGCAATTGTTTCT 2730 29 100.0 42 ............................. TGAATTCTAATCAAGAGTTACTTTGTATGAGTCATAGTTTCT 2659 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 5 29 100.0 43 ACTGCCTCTACGGCAAATGTTGCTGCAAC # Left flank : GCTGGTTGACTACCAACGACTAATCGTTGTAGTTGTTGACAGAGGCGCAGGGATGGAAGAAGAAAAGCTAGCAAACGCAGTACTGCCATTCTTTTCTACTAAACCCAGTGGCACAGGCATAGGACTTAGTATTTGTAATGAAGTTGCCATTGCCCACGGTGGACAACTTAAGCTATTTAATCGCGAAAAGGGCGGACTAATGGTGCAGTTTGATCTGCCTCTCGTTGCACCTAAAGCATAGCGTTGTTATTGCACTAACCCATATCGGGTAGGAGCGGGTTCACCCAGCGATCTTTGGGTTTTAATGCAATACATTGTGCGGTGGAAATCTTTTTGTCGTGATAAATCACGACCTACAAATAACGAGCTTCATAGGTTTATCCTGTAGGTCTTGCTTTTTTGTTAATCTAGGGTGCTCACGAGGGCTTTTTAACGCTGTGTAACGTCTTAAACACCAATCATCATTTCTAGGTAGCGATAAACAATGCACCTAACCTCAC # Right flank : CCTACCTTCTGTAGCCCTTGATTGGCGTGGCCTGTAGCGGCTAATTGGATGAACCTCCAGCGCCAATCAAGAAACTGTGTTGATTTTAGCAAAAAACAGCCATTTTGAAAGTAAAAAGTTAGGCTAACTTATTGATTTAATTGAACTGGATGAACCTAAAGGCGGCTTTTAAAGCTAACGGCATGATATTTATAGTATTTTTAAAAAATCCCTAAATTAGGGAATAGGTTCATCCAGAACCGTATTACCTTTTATTTTTTAAATTATTGTTTTATTTGCAAAATACGTACAAATATAAGACTTAAAACAAGCGAGGTTTTTTTGAGTCATTGGCTTTTGTGAATATCACTTTACCTTCTTCAAGAACTTACCTATTCTGCTAACTCAATTAACATGATGCAAGGAGCCAGTACTCGATGGAGTTAAATCAAGAAGCAATCACCAGCTATCTTAACGAGCTGCTATCAGACTCACATTCAGACTTACTCAAAAGTGCAACC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGCCTCTACGGCAAATGTTGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 604-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEL01000132.1 Pseudoalteromonas piscicida strain S1607 S1607_S15_L001_R1_001__paired__contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 603 35 100.0 35 ................................... TTGTACGCACAAGACGCATACAATGCCGATGTTGT 533 35 97.1 43 ..........................C........ TTTTCCACAAGGCAACGTTTGAATATCACAAAGGCGGATTAGT 455 35 100.0 35 ................................... TAAACAATTTAGTTCATGCGTTTTAATCAGTATGG 385 35 100.0 36 ................................... CTAATGAAGTTTCCAACTACAGGATATTTAATATGA 314 35 100.0 35 ................................... GAAGAAAAGTTGATCCAGCGTTATGCCATTGATCT 244 35 100.0 34 ................................... CCAGCAATGATGATGCAAGTATATGGACAAAAGG 175 35 100.0 35 ................................... GAGAACAAAAATGCTTATTAAATCAAACTCAAAAG 105 35 100.0 35 ................................... ATATCATGACCATTCTTCAATCGTTAAAAAAATAT 35 35 97.1 0 ..........A........................ | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 99.4 36 GTTTCTACTGCCTCTACGGCAAATGTTGCTGCAAC # Left flank : AATGTTGCTGCAACAAAATATCTCTCTTAGCAAAAGCAGAGCAAAATC # Right flank : C # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACTGCCTCTACGGCAAATGTTGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 130923-131167 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEL01000014.1 Pseudoalteromonas piscicida strain S1607 S1607_S15_L001_R1_001__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 130923 35 100.0 35 ................................... CCATTATTCCAACCCAAAGATAGGGTTTGTCCTTT 130993 35 100.0 35 ................................... CCTCTTGCGCAAGAGTTGCGCAAAATAAAAATAAA 131063 35 100.0 35 ................................... CCATGGGTTGCGAAGTTAGCTGCCATACTTTCTCG 131133 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 4 35 100.0 35 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : AGATTTAGCAAAAAATGAGATCTACCAAATAAATTTGTGAAGCTTGTCATTTGTAGGTCGTGATTTATCACGACACAGAATTTCCGCCGCTTAAGGTGCGATATAAAAACCAAAAAGATCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTCAATAATCTTGTACCTTTTATTTTAGGGTGCGTTTTTAACACTTTTTTTGAGGAACTTATACAAAGAAACAAAGGGTTATAAGCAAAAGTTGCTACTGTTCTGGATGAACCTATTCCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAAGCCGCCTTTAGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTTACTTTCAAAATGGCTGTTTTTTGCTAAAATCAACGCAGTTTCTTGATTAACGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : CTTTGGTTTTGTGTTTTTGCTAATCATTTTTTGGTTGCAGCAACAAAAGATCGCGGGGTTCACCCGCTTCTACTCGATAGGGGCTAAGCGCTGGGGGTGAGTTGACTACCAAACCATAAAACGAATCGCAATGAGGACATACACTGCCCTCTATTATTCATATTCACACCCTTCCAACGCTAACAGTCTAAAAAGTTAAAACACGACAAAAGATAACAAAAAAAACAATTTGGCAACAAAGCATTCCAAACAAACACAAATTACTTTATGCTGATTGTTAAGGATAGATTCATCACACAAGGACACCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGTCTGCACGATATGGTTGCCGCCAATGCTTTACTTGCTAAGACTATTCGCTACGATCTGGTTGTCGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGGCAACGACTCAGACGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 143717-143895 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEL01000014.1 Pseudoalteromonas piscicida strain S1607 S1607_S15_L001_R1_001__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 143717 36 100.0 34 .................................... AGAACATAAAAGTAGAATAGTTATAAGTTTAAAT 143787 36 100.0 37 .................................... CTATTTCACTTCTTTGCGGGCGTAGGCGGTCATACTA 143860 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACA # Left flank : CGACTGCTTTGAGTGTGGTTGTCGTTGAAGCAGTAGAAACGAATTTGTTTTTTCTAGGAGACCATTTATCTTTAAGTTGCAGTAACATTTGCCGTAGAGGCAGCTAAATCACAAAAGATCGCGGGGTGAACCCGCTCCTACTCGGTATGAGTAAACACCATATTAAAAATCTTGTACCTTTTATTTTAGGGTGCGTTCTTATCACTTTTTTTGAGGGTTTTATTCTAAGAAACAACGGGTTATAAGAAAAAGTTGCTACCGTTCTGGATTAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAATACGCCATTTGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTCACTTCCAAAATGGCTGTTTTTTGCTAAAATCAACACTGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTATAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : TATGTATTTAACGATTGAAGAATGGTCATGATTGTTGCAGCAACATTTGCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //