Array 1 1291733-1291301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044493.1 Streptococcus mutans strain MD chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1291732 36 100.0 30 .................................... AGGCAAACTTTAAAAGCGACTGCGTGACGC 1291666 36 100.0 30 .................................... AGTTGCTCTTCTCGCGTTTTGTTAATAGAC 1291600 36 100.0 30 .................................... AAACGAGCAAGAAGCACAACGCGAGTCGCG 1291534 36 100.0 30 .................................... TATACATAACTTCATTCAATCCGACCGTTT 1291468 36 100.0 30 .................................... TGCAATTGATTTTCTGAGACGAGGTTTCAA 1291402 36 100.0 30 .................................... TCTGATTGTCAGATAAATGTTAAAGAGATT 1291336 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : AAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAATAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCGATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1395972-1393258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044493.1 Streptococcus mutans strain MD chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1395971 28 100.0 33 ............................ CAAATTGCGTTAGCACAAATGGATAATACGCAA 1395910 28 100.0 33 ............................ CGCTTAATTTCAACAGGCGCTTTTTCGATTGCT 1395849 28 100.0 33 ............................ TAGTCCTAAAATCAAGACAATGTCAGTTGCAGT 1395788 28 100.0 33 ............................ TGCGCTAGAAATAACATTCCCTGCAAACGTTCC 1395727 28 100.0 33 ............................ TGTAATTGATGGCTGCTAACAGATTATCGTAAC 1395666 28 100.0 33 ............................ TAAAACCTTCGTCATCTGCTCCCATTGACAGAT 1395605 28 100.0 33 ............................ TATTATTAATGTTTTCTTGAGAAACGTTTTTTA 1395544 28 100.0 33 ............................ TGTTTGAGCGAAGTTTTCGGTAGCGTTCTTGTA 1395483 28 100.0 33 ............................ TACCGTTTGAAAGTGGAGTTGTGGTTATCCGGC 1395422 28 100.0 33 ............................ TATCAGATTTTGCAGAGATTAGCACGTCTGCTT 1395361 28 100.0 33 ............................ TACGGAAAACGACTGTACAGCAGGATTTTCAAA 1395300 28 100.0 33 ............................ TTTCCAGCAAAGAAGACTGCCTTATTTTTCTTC 1395239 28 100.0 33 ............................ CTCCTGTTTTCAGACCAAAACGGAAAACTACTG 1395178 28 100.0 33 ............................ TTGTTAGCCATCTAAGCCCCCCCCTGCATAAAC 1395117 28 100.0 33 ............................ CTCTCAAGGGAGTTAAAAACCGCATTAATATCA 1395056 28 100.0 33 ............................ CACGTTCAGCATAACTCTCTAACAATTGTACAC 1394995 28 100.0 33 ............................ TGGATAACCGCCGAAAAATGTCCAATTGTTAGC 1394934 28 100.0 33 ............................ CATTTCAATCAATTATTTTAGTATTCAATAATT 1394873 28 100.0 33 ............................ TATAGCCCGTATGACCAAAATCATGGCCATAAA 1394812 28 100.0 33 ............................ TAAAATTGTTTCTGATTTAGGAGTAAAGTATAC 1394751 28 100.0 33 ............................ TGGCATTTGGAACAAGAAGATATAATTCATATC 1394690 28 100.0 33 ............................ TGAAAAAAATGACACTAAAAATGTTACGTGTTA 1394629 28 100.0 33 ............................ CGCTAATTAAATGTCTCCTGTTTTAATTTTCAT 1394568 28 100.0 33 ............................ CAACTGTGATTGTTGTCGGATTAGTTATGCTCT 1394507 28 100.0 34 ............................ CTTCCGCTTGCGTTTCTTGCACGCTGTTCTGCTG 1394445 28 100.0 33 ............................ CGATAGCTTAGCTGCGTTGTGTTGTTTGTTATT 1394384 28 100.0 33 ............................ TACGCTTCAGGAACAGGCTTCTTTAACAGCTTT 1394323 28 100.0 33 ............................ TGTACAATAAGATTCGTAAGAGTGAATTGTGGC 1394262 28 100.0 33 ............................ CAACTTCTGCTTCTTTTGCTCCGCTTTGCGCTC 1394201 28 100.0 33 ............................ TATCCATCTTTGCTAGTGTGCTTAGGAAGAAGC 1394140 28 100.0 33 ............................ CGGCATGGTCAAAAAGGTATTTGACCCCGGCGA 1394079 28 100.0 33 ............................ TATATATATAAGGCTAGTCTGCCGATAACGCTA 1394018 28 100.0 34 ............................ CCATCTTCTGCGATAGTGTAATCAGTAATCCCGC 1393956 28 100.0 33 ............................ TGCCGTTGTCTAGTCAAGCGCTCTACTTCCATC 1393895 28 100.0 33 ............................ TAGGGAATTTCCCCGTTTTCTGTGACTATGTGC 1393834 28 100.0 33 ............................ CAATAACTAATTTAGGTGCATCAATGTCTGAGA 1393773 28 100.0 33 ............................ TACTTCTTCAATTAAATAGAGTGTATCTTTTTG 1393712 28 100.0 33 ............................ TACAACAATATATTCTGATGCCATAGTAGCAAC 1393651 28 100.0 33 ............................ TAGTTTAATTATCATATGTATGCTCGTTCTCTG 1393590 28 100.0 33 ............................ CCAAAATACACAGAATTTGAATAATCTATTGTA 1393529 28 100.0 33 ............................ CACGGCTCTTATCCGTGGTTTGGCAAGACCATC 1393468 28 100.0 33 ............................ CATAAATTTGTTCCGCTAAATGATTATGCAATA 1393407 28 100.0 33 ............................ TGGATTGTTGGCTAACTCATAGATTCTACTTAA 1393346 28 100.0 33 ............................ TACCCTGAAGCTGCGTCTCTGTTGTTACAGAAA 1393285 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 45 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1633927-1632903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044493.1 Streptococcus mutans strain MD chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1633926 32 100.0 35 ................................ AAAATAATTGGGATAGCAATGCCGTCGCTGGTCAC 1633859 32 100.0 35 ................................ ATGTAATAACTTGTCGCTAGAAGTCCTGTCAGAAG 1633792 32 100.0 33 ................................ TATAGCGCAAGCGGAAGCGGAAGCTAACTATTT 1633727 32 100.0 34 ................................ TTGTCTGACTGTTATCAATGGCAGCAGCCAGAAA 1633661 32 100.0 34 ................................ GAAAGAAACTTTTGGAAAGTCAGCGATAGCACAA 1633595 32 100.0 35 ................................ AACGCGAGTCAAACGGGGACCCTAATGTCCAAAAT 1633528 32 100.0 35 ................................ TTCACGAGTTTCGGCGTCATCTCTAAGCTTATCAA 1633461 32 100.0 33 ................................ TAAGCACAAGGAAGCTTTGCAAGCCGTCGGTAA 1633396 32 100.0 35 ................................ AAGAGGGAACAAGACGAAACATTAAAAGCTATTGA 1633329 32 100.0 35 ................................ AATAACGCAGCTAAGAATGTTGCAATCAACACGCT 1633262 32 100.0 35 ................................ TTGACAATCTTGAACTTCAGTGTTAGACCAATGGT 1633195 32 100.0 33 ................................ ATATTATGTTAAATCAATGAAACATGGTATTGA 1633130 32 100.0 33 ................................ TGATTGTTTGCGCTGTCACTTGATAGTTCTTGT 1633065 32 100.0 33 ................................ AAGATGGCTGGAATATGAAGGAGAGGTAGAAAG 1633000 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 1632934 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGTTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGGAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //