Array 1 510448-508301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZOL010000001.1 Streptococcus sanguinis strain SW02 Ssanguinis_SW02_Nina_Sia_YES_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 510447 25 100.0 47 ......................... GGACGATTGCCCTGTTTATAGTTCACACGGGTAAAGTAAGAAACCCC 510375 25 96.0 48 ....T.................... AATCGAATCACTGGTGTAATATGCGTTTTGTGTAATGTAAGAAACCCC 510302 25 88.0 49 .T........G.............A GGTTTTGGAACAAGTTTTAAGTTACCAAAGATGTTCTGTAAGACCCCCC 510228 25 92.0 48 .T..............T........ TCAGTAATCACCTGCCTGTCGTTCAGAAGTCACTGCCTAAGATCCCCC 510155 25 84.0 41 .T........GT..A.......... ATTTCAATTTGTTCTGTACCAATGACATAATTTCCTGCACA 510089 25 88.0 45 .T........C.....C........ GCTTTTGTAATTCCATTAACCATATATTAGTTTTAAGTTCCTTAC 510019 25 84.0 47 .T...G..T.C.............. TTAACAAGAGTAATCTCAGCTTTATCATCATAAGGGTAAGACCCCCC 509947 25 96.0 48 ..........G.............. GCAATATCCGTATATTCATTCTCTGGATCCACAATAGTAAGAAACTCT 509874 25 96.0 49 .................G....... CCAGAAGCCACTTAACAATCTCATTTTGCTTGTCTGCGTAAGAACCCCC 509800 25 96.0 52 ..........G.............. ACACCGCGAACATCCATTTTGAACCGAACACTCAGTTCGTTAGAACCTCCAG 509723 25 84.0 46 T.........G.....AG....... AAGGAGATTATGAAACATCGCTCGTCTAGTAACGGTTAGTACCTCC 509652 25 84.0 50 ....TG.C........A........ TTTTCAGCAACCTTGCCAAAAGCTGTGATGTAGAGCCAGTTAGAAACCCC 509577 25 88.0 46 ..A.T...........A........ TTTACACGTTATTTAGGATTGTGGAAGGCATTTAGTAAGAAGCTCC 509506 25 88.0 48 .T..................A...T TAAATACCTCCCACATATCTAATAACGTTCATGTCCGTTAGAACCGCC 509433 25 92.0 49 ..........G.....T........ CCAATCAAGCCATTATTGGTAGTATCTGTTCCATCTGGTAAGAATCCCT 509359 25 84.0 50 .....T..T.C.....T........ TCTTTAGTGTGGAAGAACACTGGCAGTACTTCCACAATGTAATAACCCCC 509284 25 88.0 54 .T...............G......T CATCAAAGGGCATGCGTTCAACAATATATAAGACTTCCTTACTTTAGAAACCCC 509205 25 84.0 48 TA........G.....T........ TTGTTAGAAATAGCTAGTACTTTTGTCATGTGTAAGTAATACCCCCCC 509132 25 80.0 48 .T..G.....CA....T........ TCAAAATGTATTGTATTCTGGATATTTACTAATTCTGTAAGAAAACCC 509059 25 92.0 48 ..........G.....T........ CGTTTATCTGAGATTTATAACACTTCATTAAATCATGTAAGAACCCCC 508986 25 100.0 48 ......................... GTAGATATACCAAGTTTGTTCGCTATTTCCGTGTCAGTAATAACCCCC 508913 25 84.0 50 ...T......GA.....G....... AATAGATTTCGAGGATTGTCATTCTCACCACTCATCTGGTAAGACCCCCC 508838 25 84.0 49 .TC.......G.....T........ TAAACCCTAACGTAGTAATAGTCATAATTCCTATCAGGTTAGAACCCCC 508764 25 84.0 48 .A........C..........GG.. CTTGCTCAACTTATACTTAAAGGCTATTTTAGGAACGTAATAACCCCT 508691 25 84.0 48 G.......T.......T...A.... TCAGCTCCCAGGATTTTTGTATCTGTTAATGCCATGGTAAGACACCCC 508618 25 92.0 48 ................A......G. CGAAATTTCTTTCAACCTTTCAATAAACGGGATTCTGTAACAACCTCC 508545 25 88.0 48 .T.....C..C.............. TACTTACTACCTAGAAACTTATATGTAAATAGGTTTGTAACAACCCCA 508472 25 76.0 47 .T.......T.A..A....A....T ATACTAGATGGATTCATAGAAACATCTTCAAAACATTTAGAACCCCC 508400 25 96.0 49 .A....................... CCTTTTTCTGCATAACTATAAACACCATCCTGATTATGTCAGAAACCCC 508326 25 96.0 0 ...................T..... | C [508305] ========== ====== ====== ====== ========================= ====================================================== ================== 30 25 88.9 48 AGTCACCTCGAGAGGGGACGGAAAC # Left flank : GATGTTTTAAGTCAAGGAATGCTGACGACTATATCAGCAGTTATACGGGAGAGTGAAGATGACTTTTTATAATCTTGATAGTGTCAGCAAGGAATTTGCCAGGAAGAAAACAAAGTTTTGTCTGGTTATTTATGATATCGTAAGCAATAAAAGGCGTTTAAAACTAGGCAAGCTTTTAGAACGCTATGGTACAAGGGTTCAGCGTTCTTGCTTCGAAGTTGATATAGAAAAGCTGAATTTTGAGCTTTTGATAAAAGATATAAGAGACTTTTATCAAGCCGATGAAGGAGACAATATCATCGTATATGTCGGACATAAAGAAGAAACTGTAGTCTTTAACCCCTATGCTGGCGCTGAGTTGCTGGAAGAGATATTATTCTTTTAATCTTTAAATTTTGCTGGCTTCATGGTATAATAAGGATAAGTTTCAACTGGGATGTTAAACTAGATCTAGTAGTTTGACGCGAAGACCCTATACAAGATATGGGGTAAGAAACCCC # Right flank : TGGGGGAATTATGATGCAATTTTTAAAATAGGATTAGATATTTAAAATAAGAAAAATCTTGACATCGCTTTCAAGATTTGATATAATAACAATCGTAAAAACAGTACTGATAATAACTAAAAAAAGGGCGCCCTAGATTCGGTGAAAAATACTTTCACCGTTTTTAGGCGCTTTTTCTTATTATAGAAAGGAATGGAAATGTGAAGAAAATACGATTGCATCTTTCAAAGGTATCTTTGAAGGATGATGACTTAGTCTGTAAACTGCAGGGCTTTCTCATGGAGAAGCTTTCGGATGACTTTGCCTCCTTCCTCCATCAGCAAGAGACCAATCCCTACTCGATGAATCTTCGTTCGGAGCGGGAGGAGTCTATTTGGACGGTAAACTTACTTTCGGAAGAAGCGGAGCAGCAGATATTGCCCCAGTTATTGAGTCTTGAAATGATAAAATTAGAGACTTATTCTGAGGAGATTCTGGTGAAGAATATCGAGATCCAGTCC # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 520260-518971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZOL010000001.1 Streptococcus sanguinis strain SW02 Ssanguinis_SW02_Nina_Sia_YES_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 520259 36 100.0 30 .................................... GAGAGAGCTAAACAAAGAGGCTAAACTCAG 520193 36 100.0 29 .................................... ACTAAGGAAGAACCGAAAAACGCAGCAGA 520128 36 100.0 30 .................................... CTGAAAACAAAAATCAAAACATCTTTTTCA 520062 36 100.0 30 .................................... AAAGATTTGCCATTGCTAATAATACAAACA 519996 36 100.0 30 .................................... TTCTTTTACAGATTCTACTAGTTCATCTCT 519930 36 100.0 30 .................................... AAGAAGATTTTACACTATCTACAAATGACC 519864 36 100.0 30 .................................... GGCTGATCGAGGACGAAAAGCCTTATCAGA 519798 36 100.0 31 .................................... CTTTGTGATATTAAGAATTACATTTTCTTCA 519731 36 100.0 30 .................................... TAGCCGGCAAATGGAGCGCATGGTCAACCA 519665 36 100.0 30 .................................... GATGGCATTACCTAGGGCGCCATCAAAAGG 519599 36 100.0 30 .................................... AAGCAGGGTTGATTTACCGGTCGGATGTGT 519533 36 100.0 30 .................................... CAGCTTCAACAATTAAAACAAATTGGATAG 519467 36 100.0 30 .................................... TTTGTTTCATGTTCTTTGGTTTCTCCTTAA 519401 36 100.0 30 .................................... TACTCCCTGCTTCAAAAGCGAACTTCTCGC 519335 36 100.0 30 .................................... TCTAGAACTCATGCTCGAGTATCAAGGGGC 519269 36 100.0 30 .................................... ATATTATAGTTATATCAAGTTAAGAGCTTG 519203 36 100.0 30 .................................... TCTTTTCATCATCATAAGACCTAACCTCTG 519137 36 100.0 30 .................................... AAGTCAAAGAATAATCTTAAAGCTGGTACA 519071 36 100.0 29 .................................... TGTTATAGCTGGTGTTGGTGCTCCAGAGG 519006 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATAGTTATTTAAACTATAGTGAGTTTATAAATTGTTGTAAAAAGATGAATGAGATGACTATGGATTTACAAAATTTTCACGTTATTAACTTTCTATCAAGCGAGGGATATATTTATATAAATAAAGAAAATATAATGAATGTTAATATTGTTGCGGATTTAGTAGAACACTTTTACGAATTTTCATTTATGTATGAAAGATTTTTTGGTCAATATCCTGCTAATGAGGTACCGGATGAAAAGGTTTTTTTAGAGTCGTTACAAAAAGTTTCATCATATCTTTTTAGTAAGGATATTGCTCATATTAGTTTATCTATTCCAGATATAGTTACTTTGAAAATTATAAATCATTTGTACCAATACGATAAAAAGCCAAGAATTTGTTCTACGATGTCTAATCCGCTATTAATTAAGTTTTTGAATACCTATAATTGACAGGAATCGCAATAGGCATTATAATCAATATATGAGTATAAAAATCACAATTTTTCCATTTGAG # Right flank : AGCTTACTATAGACCAGATAGCGTTGTTCTGTTTTTATTATAGTTTAGGATAGAGGGGAATCTGTAATGTTTTATCATAAAAAGGGCTGAGTAAATCAGTCCTTTTGTTCTCTATTTCCCCAAGCAGAATTGGCTGAAGAGTTGGGTGATGAGTTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAGGTGCGAGTCATATCGACTTGGAGAAGATCGACCGGCATACCCATGTCCAAGCCTTGGTTGACGGCTTGCAAGCTTTCCAGAGCTTTTTCAATCAAGGAGATATGGCGGGCGTTTGACAGGTAGGTGGCGTCTTGCTCGACGATACCAGCATTTTCAAAGAAGAGTTGATTGATTCGTTCTTCAATTTTATCGATATTTTGATTGTGGAGGACGGAAATCTTGATGACATCAGTTGGCAGCAGGTCCAGCTCAATCTTTTCTTCAAGGTCAGTCTTGTTAAGCAGGACGATGCGATTGCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //