Array 1 49-1052 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000259.1 Leptospira santarosai serovar Arenal str. 11 contig_259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. GCCAGCTAAGCAATATTAAAACAACATAGAAT 110 29 100.0 32 ............................. GCATAGCGATCCACAATTTGGGGCGGATGAGG 171 29 100.0 32 ............................. GGAAACGTTATGTTCCGGTTGATTCTTGGCAA 232 29 100.0 32 ............................. TAAATTATGGGAATCAAGGACGGTTTATTAAA 293 29 100.0 32 ............................. AATGGGGGAATCCGCTTACTCCTATCTCCGAA 354 29 100.0 32 ............................. CGGATCCTCTTCCGGGATCGTAGACGGAGCCA 415 29 100.0 31 ............................. TTTGTAATACAACCGCTTGGCTCTCAGTTGA 475 29 100.0 32 ............................. GAAAACCCCTTACTTTTTCTGCTTTGGAGCAT 536 29 100.0 32 ............................. ACTATTCTATTTCAAATGAACGAGATAGGGAA 597 29 100.0 32 ............................. GTCAGAACGACTTTCCTTTTATCCGAACGCGA 658 29 100.0 32 ............................. AAAGACTTAAACACGAGATGAGATATTACAAT 719 29 100.0 32 ............................. AGCCCTTTCTCTGTTCTATCCCACACGCCCAC 780 29 100.0 32 ............................. AAATGAAACACTGGTTGAACCTACGCCACTCT 841 29 100.0 32 ............................. ATAATGACAATCGATGAAATAAAAAAGAATTT 902 29 100.0 32 ............................. TAAGCGTTTTTGATGATCGTTCCGGACGGTGC 963 29 100.0 32 ............................. AGTTCGTCGTAGAGAGAAAGAATGTTCTTATA 1024 29 79.3 0 .........G.............ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GCGTGGGGTTGAACCGAAGTGGAAACGAGTCCGATCGTATCCACGCCAC # Right flank : ATTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTATATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTCGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATCTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1150-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000237.1 Leptospira santarosai serovar Arenal str. 11 contig_237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1149 29 100.0 33 ............................. TCTTGTAAACTGCTAATCATTTGTGGCCCTTCC 1087 29 100.0 32 ............................. AAAATCGACGAACTTGAGCTGCAGAAACTTCC 1026 29 96.6 32 ............................A GAACCGTCAGCGTTTTTCCATGCCCTGCCAAA 965 29 100.0 32 ............................. CAGTTCCACCTCCTTCCCGTTCTCAAGTTTTT 904 29 100.0 31 ............................. CGATCTTTTATTTTTCCGCACAAGATTTTAG 844 29 100.0 34 ............................. GGGTCGCGCAAAATTTTGAGCCACGAAAGGTTTA 781 29 100.0 32 ............................. GACGCTCACAAAGATGCGATGAGCGAAAAATG 720 29 100.0 32 ............................. GCAATTCTTTCGAGTGGCTATCACATCGCGTA 659 29 100.0 32 ............................. GATCCTGCGATTCCACTTCCTCCAGAAATCGA 598 29 100.0 33 ............................. TATGTGTCGGAGGCAATTAGCTACGAAGGTGAA 536 29 100.0 32 ............................. AGCGAGCGCATCAGCATTGTATCTTGCGTCAT 475 29 100.0 32 ............................. TATTCAGAAAGAAACGATCGCTATCAATCAAT 414 29 100.0 32 ............................. GAAAAAAACATGTCACGCAGAATTCACAGTAG 353 29 100.0 32 ............................. TCAAGGAAGAAACTTCCTTTATGGAATATCCT 292 29 100.0 32 ............................. AACTGATTCGTCGAATTTATTGGACACCTTAC 231 29 100.0 32 ............................. GGAAATGAGAACTTGGCACTGCCTAACCGAGG 170 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.8 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGCGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GGCTGCGCACATCCGAATGAACCGCTTCCCACCATACGTAGTCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGCTCGGCGTAAGAAAATCACAGTTTCCCGAATGTCGGAACTCCCACAGAATCAGAGTTGCCGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 73627-73109 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000141.1 Leptospira santarosai serovar Arenal str. 11 contig_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73626 29 100.0 32 ............................. GATTCATCCTTTAGAGTTGCCAAAGTCGGAAC 73565 29 100.0 32 ............................. AGAGTAGATTTAATTCTATGAGTTTTTGTGTA 73504 29 100.0 32 ............................. CATTCATGTTAAGACCTGGCTCCGGTTTTGCG 73443 29 100.0 32 ............................. AAATACTCTCAAAGCTCAAAACCATTCTCGTA 73382 29 100.0 33 ............................. TAATCCAACCCAGGTGTGGTTCGGACTTCCTCG 73320 29 100.0 32 ............................. AAAATAAAGAATTTCTTCAGCCAGGATCGAAA 73259 29 100.0 32 ............................. GCAAAGAAAAAGCCTTTAGGCACACTTACAGA 73198 29 100.0 32 ............................. CTCTCCACCACGGAGAGAAAATTTGAATAGGC 73137 29 75.9 0 .....................GCATTT.A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CGTGGGGTTGAACCGGAAAGAAGTAAAATGGCGAAGAAAAAAAGTT # Right flank : TTGCCAAGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATAAGACGGTATAAGGAAAACGAGATATCCAAATCCTATTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATTTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCAACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 748-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000086.1 Leptospira santarosai serovar Arenal str. 11 contig_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 747 29 100.0 31 ............................. AACAAGGAATGGAAATTGTAAGAACTGATAC 687 29 100.0 32 ............................. ACAAAAGCTCACCAACGTGTTTTTTAACAATC 626 29 100.0 32 ............................. ACCATGAGCCTTGAGGCAAAGGGCTTATTGGG 565 29 100.0 32 ............................. TTTTTGAGCGCCTTCTCTTCCGAGAATTCCGT 504 29 100.0 32 ............................. CAAGCTCTCGAACTTCTTACCAATGCGGCCAA 443 29 100.0 31 ............................. ACGGCATGAATCGAACACCCGATCAGGTAAT 383 29 100.0 32 ............................. TAAGATTCATCTATATGCCCCTTTTTTTTTTG 322 29 100.0 32 ............................. TACGTTAGCTGCTCCTCCAAACCCATCAATGT 261 29 100.0 32 ............................. TCATCCGGAATTTCGTTATCACCCGGAGAAAG 200 29 100.0 32 ............................. ATTATTTCTATTCACATCAAACGATCTTACAA 139 29 100.0 32 ............................. TTATTTGATGCATACCAGTACTTTGTGGGTTC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GCGTGGGGTTGAACCGCGCAATAGCGGTGCCGGTAATTTCAAATTTG # Right flank : GGTTTCACTAATGTTTCATTTTTCAGAAAATAACTTTTCCCCACATGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 50-691 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000084.1 Leptospira santarosai serovar Arenal str. 11 contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 33 ............................. GAACACGAATCGATAAACCTAAAATGTCGTCCC 112 29 100.0 33 ............................. TATGCCCTCTCGTTCTCTCTGTTCTGCGAATTC 174 29 100.0 32 ............................. TATTCTTTTAAAAAATCAATCAGATTTTTTTT 235 29 100.0 33 ............................. GTCCAGTTTACTGGGTCCAGCACTTCTGCTCAA 297 29 100.0 32 ............................. AGAACATGGTTCGGGAAGAACTCTGAGAAGAA 358 29 100.0 32 ............................. ACACCGAGAGGAAGGATAATATGAGCAAAGTT 419 29 100.0 32 ............................. CCAACGCTTTATTGTAGACGAACCTACTCCAA 480 29 100.0 31 ............................. CGCTATTTGTTGTTAATGAAGAAGCTGCAAA 540 29 100.0 33 ............................. GACATTAAGGGCCAAAATGTTTCTTGGTCCGAC 602 29 100.0 32 ............................. GAAACGGAAAGGTGGTGAATAAGCAAGTTGTT 663 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TGCGTGGGGTTGAACCGCCCACTGACTCAGAAACAATACGAGAGCCACGC # Right flank : GCCTAGGGTTGCCTGTTTTGTTGCACACAAGGCTTTTCCCCACATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 809-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQL01000314.1 Leptospira santarosai serovar Arenal str. 11 contig_314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 808 29 100.0 32 ............................. ATATTTTGAGTCGCGTAAGTTCGATAGGGAAA 747 29 100.0 33 ............................. TTCGATGGACAAGTGTTACATGCGAATGGATTT 685 29 100.0 32 ............................. TTGTCGTCGTAGCCCGCATCAAGTAACTTTTG 624 29 100.0 31 ............................. TTTATTTGCTCCATTAGAATTAACAGAATCA 564 29 100.0 32 ............................. TTAAATGAAATCAAAAGGGACAGCATATGTGC 503 29 100.0 32 ............................. ACAATTGGTCGGGTGGTAATTATCAGGAATTG 442 29 100.0 32 ............................. AAGAAATGTTTATGAATACAATTATTAGCCTT 381 29 100.0 32 ............................. AAATACAATCCGCATCCGGGGAGTTTATTACA 320 29 100.0 32 ............................. ACTGCGTGCGTGGAACCGTAGCAGGTAGATAT 259 29 100.0 31 ............................. GGCATGCAATCGAATCTCCGATATGTTTTAG 199 29 100.0 32 ............................. CAATAACGAACTTTTTTGGTATAGAAAAGAAA 138 29 100.0 32 ............................. GATGCCTGTTATATTTCGTTTTGCGATTTGTG 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TTTTTACAATGAAGTTTGTGTATGGAGGCGACAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTACCACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTTTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAG # Right flank : GATTGCAAAAGAATATATTGCCGCTGAAAAAAACTTTTCCCCACATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //