Array 1 980083-981575 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023303.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4526 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980083 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980144 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980205 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980266 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980327 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980388 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980449 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980510 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980571 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980632 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980693 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980754 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980815 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980876 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980937 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980998 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981060 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981121 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981182 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981243 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981304 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981365 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981426 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981487 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981548 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997707-999671 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023303.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4526 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997707 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997768 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997829 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997890 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997951 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998012 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998073 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998135 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998196 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998257 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998318 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998379 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998440 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998501 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998562 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998623 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998684 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998745 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998806 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998867 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998928 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998990 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999093 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999154 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999215 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999276 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999337 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999398 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999459 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999520 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999581 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999642 29 96.6 0 A............................ | A [999668] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //