Array 1 1203060-1203930 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032153.1 Alcaligenes aquatilis strain QD168 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1203060 28 100.0 32 ............................ AGGAATTGGCGAGTTAATGCCGCTAAGATAAA 1203120 28 100.0 32 ............................ TTCATTTTCAACAGGTCACGGCCAATGATGAT 1203180 28 100.0 32 ............................ TGATTGAAGTCGAATAGCCCGCGCCCTGGGGC 1203240 28 100.0 32 ............................ AGGACGGCAAGCAACGTCACTTCGAGGTCAAA 1203300 28 100.0 32 ............................ TCAAATGCAAAGGCATCGTCTGTGCCGAAGCC 1203360 28 100.0 32 ............................ TAGGTTCATCGTCTGAGCCAGCAGATTGCTAT 1203420 28 100.0 32 ............................ AACGCAATCCCCATGTGCCACAGAACACCATC 1203480 28 100.0 33 ............................ AGTCACGCAGCGTCGTTGTGCCGACCCCGATTA 1203541 28 100.0 32 ............................ GTGATCGGCTCCCAGTTCTTGATAATCAAACC 1203601 28 100.0 32 ............................ TTAAACGGCGGGTACTTCAATTTGAACTCCGT 1203661 28 100.0 32 ............................ TACATCGACCCCAAGCTGATCGAAGTTCTGAT 1203721 28 100.0 33 ............................ TGTGTGATGTGATTTGACAACAAAAGGGAGGTG 1203782 28 96.4 32 ........T................... TGCTCATTGGGGCGGTCAATGACGACGTGACC 1203842 28 100.0 32 ............................ TTAACTCGATGTTTATTTTTGTTAGGTAAGGG 1203902 28 89.3 0 ....................T.A....T | C [1203924] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : CGCACACTTAAATCGGGATGCCGCAGGGCGGCTTGGACATCGCTGTGCCTATGAACCAGCCACGCCCCACCACAGAAATCTGCATCCCACACCAGAGGTGGCCCCTGGCGAAGGCGGGCATAAGCCGGATAGGGAGACACGAGATTGAAATCGCCAAACATGACACTGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCAGGGTGTTTTGAGGTGATTAGAAGGCTATTTTTGGTTTATGGCGGCTGTTGAATAAAGTTGTGTGACTATTTTTTACAATAAAATTGATAGTGAAGGTGAGGTGATCGCCCTTTCCTTGTAGAACCCTTTTTTCTATGGTTTTGAAATTTCATTTAAAATCAAAAACTTATAAAGTGGTCTGAAAAAAGGGTTTTGGTCGAAAAAAAACCATAAGATAGAGCCTGATTGGCGTTCAGGGATAAACGCTCTA # Right flank : TGGAGGCCACAGGCTGCTGCTATATGGGCTGTTCAAACAGTTGAGGTTTCGGCTACTTAGCCAGCTTTTTATTGTTGACCTTTGCCTATCCAGCGGCCAGACCGTTTCTGGTAGTAAGCTGGCTGCGATGGCAGGCTAGAGTCATAGCTTTAGCCTGCCATCGCACTCATTATTCACCGAGCATCAGAGGCTGCCGGTAGTCCATCATTACTCAGTTTTTCGGTTTTGCGCTGCGGCAACTTCCCATTCAAAATAAAGTATGCCAACAGACCAATCACCAGTCCCCAGAAGGCCCCGCCGATGCCAAATAGTGTGATGTTGGCGGCCGAGGCCAGGAAGGTGATTAACGCTGCTTCACGCGATTTGACGTCTGCCATGGCGCCGGCCAGGCTGCCACCAATGGTTCCCAGTAGCGCCAAGCCCGCCAGGGTGGTGATGAAGGTTGCGGGGAAGGCCATGAACACGGCGGCCAGCGTAAGGCCAAAAACACCGACAAGAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1321862-1325258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032153.1 Alcaligenes aquatilis strain QD168 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1321862 28 100.0 32 ............................ TACTAAAAAAGTCCATGATACGACCAGACTTG 1321922 28 100.0 32 ............................ AAAGACGATTGAAGCAGCATGGACGGAAAATA 1321982 28 100.0 32 ............................ TGAAAACGGTGCGTGACGCCAGTCCTGATGGT 1322042 28 100.0 32 ............................ TGGTTAATAGCCAGAGCTGGCACGACGACATT 1322102 28 100.0 32 ............................ TTGGCTTCCAAAACCTGCGTTGCTGCTGCTGT 1322162 28 100.0 32 ............................ TGGTGGAGCAGGTTGTCATTGTCCATCGAAAC 1322222 28 100.0 32 ............................ ATGCTGTAGCGATTAAGCACTCTGCGGACGAT 1322282 28 100.0 32 ............................ TCTGGGAAAGAACTGGATCATGCGAATGCCAA 1322342 28 100.0 33 ............................ TTTTGGAGATTGTATGACTGAGCTTATTTCTAC 1322403 28 100.0 32 ............................ ACTCTTGCTAATCCGCCATTCCCCGTCCTGTT 1322463 28 100.0 32 ............................ TATTGCGTCTTTCAGGTTGTCCAGTTCTCCCT 1322523 28 100.0 32 ............................ GAGTCGCGAAGAATCTCAAGTATGGAGCTGAC 1322583 28 100.0 32 ............................ CAAACCAGACTTTGCAAACCAAGATTAACGGC 1322643 28 100.0 32 ............................ ATTTGGTCTAAAGTAAAAAACGGGAGGTTCTT 1322703 28 100.0 32 ............................ TAAGCGCTGCTGCATGAAATAAAGATTGTCGT 1322763 28 100.0 32 ............................ TCTGTGCGCGACTCTGCCTTGCTGGCCTTGTC 1322823 28 100.0 32 ............................ TTTTTGATGGTTAGCCGGGCGTCTATGTCAGC 1322883 28 100.0 32 ............................ TTAAGGGGGGATACGCCAAACCCAGGGTCTTT 1322943 28 100.0 32 ............................ GCCAGAGGCTTGCATGCTGACTGGTCTATTAC 1323003 28 100.0 33 ............................ GTTAAAGTCTTGCCCTTGAGGGGGGATTCCACC 1323064 28 100.0 32 ............................ TGCGCGGTGAAATACACCTGGCGGCAGTTTGT 1323124 28 100.0 32 ............................ ATAGCTCATTAGCCAGGATTCGATCTTGATAA 1323184 28 100.0 32 ............................ TGCTGTAACAAGCGCACACCACGAGAAACACC 1323244 28 100.0 32 ............................ TTCCAATATTTTGATGCTTGTGTGAATCACGG 1323304 28 100.0 32 ............................ TATGACGCAATATTTGATTGCTGCGTCACTAG 1323364 28 100.0 33 ............................ AATGGTAGGCGGCTGCATCGTAACGATTGGGAA 1323425 28 100.0 32 ............................ AGACAGGAGATAGCAATGTGGCAACCGATTGA 1323485 28 100.0 32 ............................ TCCCCTCAGTAAATGCGCCACGTTACCTTTAG 1323545 28 100.0 33 ............................ AATCGGTGGCGCGGAAGGGCAGGGGCTTCTTAA 1323606 28 100.0 33 ............................ ACAGGCTCCGGGTAATACCCGCCCAGGATGAAC 1323667 28 100.0 32 ............................ ATCAAGGAAAAGAAGGCAACCATCATCCAACT 1323727 28 100.0 32 ............................ TGGCGAAGACCAGTAGTCCAGATCACTCAAAC 1323787 28 100.0 32 ............................ GTGATGAAGCTGGCGGTCGTGATGCAAATAAT 1323847 28 100.0 32 ............................ TGGAGCGCAGGCTGGGACGTGTCAGACTGTAA 1323907 28 100.0 32 ............................ TGGCGCAGCAGGACGTTCCGTTCGTCGCCGTA 1323967 28 100.0 32 ............................ ACCGTCACATAGCCGTCCCGATAGGTTGGGAT 1324027 28 100.0 32 ............................ GGTCTACGGTGGCGCTGAACAGCTCGGCGTAA 1324087 28 100.0 32 ............................ GATCATGGCGCTCAGTCCGTCACCCCCATTTG 1324147 28 100.0 32 ............................ TACCTGGATCGCAAGAAAGTTGGCGCTCACAA 1324207 28 100.0 32 ............................ TGATGGTTCCAGAGAAAAGACTGTCTGGTATG 1324267 28 100.0 32 ............................ ATCAACAACAGCGCCGACGTTCCCGACGTGAT 1324327 28 100.0 32 ............................ TTACGCGGCCGATCTTCGCGGCATGCTCCTAC 1324387 28 100.0 32 ............................ TGATCAGCCGACGTACGCCCACCGCCCGATTC 1324447 28 100.0 32 ............................ TTCGCTACTGGCAACAGGTTCGGCGCATCGAA 1324507 28 100.0 32 ............................ AGTTGCCAGTGGTGGCCGCGTTCGCCCCTTCG 1324567 28 100.0 32 ............................ AGATCGTCAAGATGCTGAGAAAAACGGTGATT 1324627 28 100.0 33 ............................ CACTCTGGCATTGCTGGTGCGCCAATTGCTATG 1324688 28 100.0 32 ............................ CAAACACGCGTGAGCTGATCGAGGCCAAGGGC 1324748 28 100.0 33 ............................ AGTGGTGGCCGCGTTCGCCCAGTTGCCAGTGGT 1324809 28 100.0 32 ............................ GAAATGGTGATGGCGACCTGATCCATGTCAAA 1324869 28 100.0 32 ............................ TGCCCGGGGGTGACACACGGCACCGCAATAAA 1324929 28 100.0 32 ............................ TGGTAAACAGCGTGAGCTGGAACAACGACATT 1324989 28 100.0 32 ............................ CGACATTTGACTGCTGTGGCGCGCCAAGGCGA 1325049 28 100.0 33 ............................ TGCTGCTGCGTCTTGGTGGCCGCCCGCCCCGAA 1325110 28 100.0 33 ............................ AACAAACCAGGCTGTGATCGGCTCCCAGTTCTT 1325171 28 100.0 32 ............................ TCAGCGGCCTCGGGGGAAATGCTCATGCCCCA 1325231 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.9 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGAGTCTGGAGCAGAGTCAGTGGTTACGTGGGATGCATGATCATATTGATTTGAAAGAAGCCAGCCCTGTTCCGCAGGGCGCGACGTATCGAACGGTTTATCGTCGTCAGTTCAAAACCAATGTCGATCGTTTACGTCGCAGACGCATGAAGCGGCATGGAGAAACAGCAGATCAAGCTGTGGCGGCGATTCCTGAATGTGTTCAACAGCAGCCAAACTTGCCGTTTATACAGATGCGTAGCCAAAGTACCGCACAAACATTTTGTCTGTTCCTGGAAATGGGACCGGAGCAGGAGGTTGCAGCGCTTGGACGTTTTAATGCTTATGGACTAAGTGCGCAGGCTAGCATCCCCTGGTTTTGACCCTAATTTTTAGTGAAAATAATTATTCTTTAAAATCAATGGCTTGTGTTTTTATTTAAAAAAAGGGTTTTGTAGGTGAAGAAGCCTGAGAGCGTTGAGTATTCAGCGCTTTCGGTGTTTTTATTCTA # Right flank : GTGTTTTACATAGTTAAGCGTCTGCTGTGTGTAATCTTTGCCTTTTATTGAGATTCAGCAGCAAAATCCATTCTCATTCAGCACGCCCGATTCGGCCTTGTAACTGCTCTTTCAAGCCCGTCGCGATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAGGGAAGGCCTGAAAAAGGATCTCTTTCCTTGCCCCCCTGTTGCGCCGTTTTGCCAGGGCTCTAGGCCCGTTGTTAAGTCGCGTTGAGCCAGTGTTGGGGTGAGCAAGCCCCTTTCTTTTTGACCACTATTATTTTTTGATCACCTGCCCGCCATGAGCCGGGCGGGTGTAGATCCACGGGATTATGTATGAAGTCCAAAGCAGTGAAGCGTCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTATTGGGGGCGCTGGCCGCACAGGCCGGGCGCTCGTCAGAGCAATTTGAAACAGTAGCCGTAGAGCAAGGCGATATACGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //