Array 1 56023-59149 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQN01000013.1 Roseburia intestinalis strain AF31-21AC AF31-21AC.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56023 36 86.1 29 T..C..T..T...A...................... CGCTAGGATGTGATCTTGATACCGTGATT G,C [56027,56036] 56090 36 100.0 30 .................................... ATTCAGTGCATGAATTGACGCAGATGCCTC 56156 36 100.0 30 .................................... CCCGTAATTAAGAGTCGCCTATCGCATTTA 56222 36 100.0 30 .................................... CGGCGCGTTCACGCTGGAGACAACCGCATG 56288 36 100.0 29 .................................... TTATGTCGATACAATTCGGTTCTACCTCT 56353 36 100.0 30 .................................... GATAATAGCACGGTTGGTACTAGCAGGGTA 56419 36 100.0 29 .................................... CTATATCAGCCGGGTGCGTGCCCCGGTCA 56484 36 100.0 30 .................................... CAGGAACTGCCCCACCTGCACCGATGAGAC 56550 36 100.0 30 .................................... TCAGCAAATACCTGTTTTGTAAAAGAACTG 56616 36 100.0 29 .................................... TTTGCCGGAAACCTGTAAACCTACCAAAC 56681 36 100.0 30 .................................... TTCCTAAGAATTTATCCATGCTGTTTTTAA 56747 36 100.0 29 .................................... AAAAACCTTAGTTTACATCATGCCTACTA 56812 36 100.0 30 .................................... CCTGTATTTTCTACAATGCTTAAACCCTCA 56878 36 100.0 30 .................................... CCTCCTGTGAATCTTTTATACTGCCCTGTA 56944 36 100.0 30 .................................... TATTGTTGTTATAAAATGGGATAAACGGCA 57010 36 100.0 30 .................................... TTCCAATCCATTCAGTTCTTTCCACTCATC 57076 36 100.0 30 .................................... TGTCTCGCTGAATCCACCTCTCGATGTACT 57142 36 100.0 30 .................................... TTCCGTATATTCATTCTTTGTGTATGTGCG 57208 36 100.0 30 .................................... TTCCTCTGTGCCCTCTGTGGCGGTCCTACG 57274 36 100.0 30 .................................... GGAATTTTTGGATAATTCGAAAACGTAATT 57340 36 100.0 29 .................................... ATCCTAGTAATATCGTTAAAATCAGCACA 57405 36 100.0 29 .................................... TTAAAGATAAAATACTATTAGAATTTTGA 57470 36 100.0 30 .................................... GTTTCTGCTGTCGGACATTGTTCTGAAATT 57536 36 100.0 30 .................................... TTGAATACCGCGAGCATGTTGCCGGTGTAG 57602 36 100.0 30 .................................... AAGCTCCCACACATCAGTGTGAGCGGAGGA 57668 36 100.0 30 .................................... TGTCCGGGGATATAATGAGTCCGGCTGCAA 57734 36 100.0 30 .................................... CAAGGCTGTCTGCATCTTTTTTATTCTGCA 57800 36 100.0 30 .................................... TTTCTTCACCACCCCATTGGAATTTCTTCA 57866 36 100.0 29 .................................... CCTTTAAAATAATCTGATAAAACAGACCT 57931 36 97.2 30 .....G.............................. CAAGGCTGTCTGATTCTTTTTTATTCTGCA 57997 36 100.0 29 .................................... CCTTTAAAATAATCTGATAAAACAGACCT 58062 36 100.0 29 .................................... CAACATTTTCAAAAGTTAAATACGCATTA 58127 36 100.0 30 .................................... TAACTACCTGCAGAGTGTCATCATCTTTTG 58193 36 100.0 30 .................................... GAAGAGAGACATGTAGAGGATATGTGTAAA 58259 36 100.0 29 .................................... TTAAGCGATATAACTTACCAGGCGGTAAA 58324 36 100.0 30 .................................... AATCTGGAAGCCAGACGGAAAAGATACGGC 58390 36 100.0 30 .................................... GCGAAGACGTAAAAGGAAATTTTTACACGT 58456 36 100.0 30 .................................... AATTTTATTCTTCCTGTTTCTTTCATTTTC 58522 36 100.0 30 .................................... ACAAGTCCGGCTATTTTCATGCCACCGCTG 58588 36 100.0 30 .................................... GTTGTAGTCGTATTAACGTCAAAAACACTG 58654 36 100.0 29 .................................... CGGTATATTTTTTACTAACATTTTATAAA 58719 36 100.0 30 .................................... ATATTTTCACATTAGCACGATCAATCCGTC 58785 36 100.0 30 .................................... CCTTCAGGAGGGCTATCTCCTTCTCAATCA 58851 36 100.0 30 .................................... CCGGGTTTGTTCCAGGCAAAATCGGGCTTC 58917 36 100.0 29 .................................... TTCTCTTTCTGTAATACATAACCTCTGCG 58982 36 100.0 30 .................................... GTAACTGCTTCCCCTTCACCGGCATAGTGC 59048 36 100.0 30 .................................... CACGTAGATAAAACTACTAGGTGCTATTTT 59114 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 99.7 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : CTTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGTAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTTGTTGAGAACAGGAAACCTTGATTTACAAGGTTTCCTGTTTTTTTGTTGTAGTGTAAAGCTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATCGATTCAGGGGTATCCTCAAATGTTTTTGTTCCCAACATGACTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAATGCACGTACAGATCCTTTTATAGGCAGATTTTGTTTTAAACGCTGCTTATGCATCGCAACTGCATCCATCCCATTGCATATTCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAATTTACGAAATTTCGCGGCATCCTTTTTCTCTTTTGCAGTTACTACCGGCAGATCAAAAAACACTAACATTCTCATAAACTTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAGAGCACTACTGTAACTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 39066-38757 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQN01000028.1 Roseburia intestinalis strain AF31-21AC AF31-21AC.Scaf28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ===================================================== ================== 39065 20 100.0 52 .................... TTGAATACAACGAACATGACAAAAATTCCGTAAAGCGTTCTCGTCCCCTCCA 38993 20 100.0 53 .................... CGAACAGAAGCGCATTGACGACGGTTAGGAATAAGAAGTTCTCGTCCCCTCCA 38920 20 100.0 51 .................... ATTCTGTGACATGTATATCAAATAAGTAACTTGTAGTTCTCGTCCCCTTAT 38849 20 100.0 53 .................... AAAAAAACAAAAAACTTATAAAAGAGAATTTTAAACGGTTCTCGTCCCCTTAT 38776 20 100.0 0 .................... | ========== ====== ====== ====== ==================== ===================================================== ================== 5 20 100.0 52 CGGGGTTCTCTTATCTCAAT # Left flank : ATTCTATGAATATCTTCATCTCTGCCTCGCGCATATCTGCGCAAAACAACAACCTGATTGCGGATCTTTGCATCAATGATTCTTTTTGACATTTCCAGTTTAAATGTTTCATTGTGTCCGATTTCCGCCTGAATACGCTGTCTTTGCACATTCACATGGGAAGTTGAGATCAGCCTTCCATAATACGCCCCGCTTGTGGAATAAAACAGGATATTCACTCCCCGTTTTAAACATTCCGTCAGGCAGCGTGTCGTAATCTGGACACTGCCAAATACTTCGATCATCTCTAACGTCTCCGCTGGAATACTTTTTATCATTCCATCCTTGTACTTTACCTGAAAACGGTTTGCTTCTATCCCGATACTCGCACCCTGTTCACTGACATAAAGATAACTCATGTGTTTCCTCCCTTGTTTTTATTTGTCCCCTTACTGAAGATTTTTTCAATTATACTTGTGTAAGTATATAACAAAAACAGCTAAAGGTTCTCGTCCCCTTCT # Right flank : ACTGTCCCTTACACCTCTCCAAACACAAGGCTTTCATCCCCCATTTGCGGGGCAAACCCGCAAATGAGAGAAATCTCAATATCAAACTGGATTATACCGATCACAAAGCCTGATTTTAAGCCTATCGGCGCAAAATTGTCATATTTACTCAAATTCAATCCTCCCCATCCCCATATGATACAGCTTTCCCTGATACTTTGTACACTTACAGACATGCGGTGCCAGTTTAAGCTGCAGGTCTTTGGTATGTTTATGCACAACATAATTTTTTCCAAGTGTATTTTTAAACACATTATCCACAACTTTTACTGCATTACTGCCAAGCAATGGATATAAAACTGTCTTTGAAAGAAAACCACATCCTCCACCTAACCATACTGTATTTTTTTCCTTTGCCTCCCAGTGGAATCTTGCATAAAAATACCGGTTACAGATATTCTGGAAAATATTCAGTGCTTCTATGATATCTTCCATCTGATACGGGCAGATTGTCGTGTCAA # Questionable array : NO Score: 4.48 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.75, 7:-0.57, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGGTTCTCTTATCTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 40880-41342 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQN01000028.1 Roseburia intestinalis strain AF31-21AC AF31-21AC.Scaf28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 40880 35 97.1 38 ..........A........................ TTAGGTGTAACTGTCTGTAACAGTTCGTGTTAATAAGG 40953 35 97.1 35 ..........A........................ TGTTTAACACTTTATTGTGTCCGTATCTCTTAACT 41023 35 100.0 38 ................................... TATTCGCAAGACTTTTTAATGCTTTCTTTGATGGACTT 41096 35 100.0 38 ................................... TTTCTTTCAGATCCTGTAAAAGCCTGCGCAAGTAACTT 41169 35 97.1 36 .............................T..... CGTAAAGCCTTTATTCAATTATCAATGTACTTGAGA 41240 34 91.4 34 .........TA.........-.............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGA A [41263] 41309 34 88.6 0 ..............-.....CG..........A.. | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 95.9 37 ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Left flank : CGACGTTTGTTACATGATATTCAGGAGCTGATCGATCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGATACGGAGAGGTTAATCTTTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGGATTGAGATNNNNNNNNNNAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : ACTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATTAGAATAAATTTTTACTAAATAACTATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATATTGCATATTTGCAGATTTTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGAATCGTTCCATGGTTTATGAGATCATAGAACGCCGGAAACTTACCAGAGTACATGAATTTGATTACTTTTACGAGGATTTCAGGAAGGTGATCAGCTGTATATATGAGACGATGGATGAATCGGATACATTGCTTTTAAATGTGTCATCCGGTACACC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Alternate repeat : ATTGAGATAAAAGACCCCCGTAGAGGGGACGAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //