Array 1 2213066-2209046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085936.1 Acidaminococcus fermentans DSM 20731 strain FDAARGOS_1571 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2213065 31 100.0 35 ............................... CTGGAACCGGACGTACATGTCATTGAGCGATGCCC 2212999 31 100.0 34 ............................... CTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGC 2212934 31 100.0 35 ............................... CTACATTTCCCACATATATATAGGGTACGTATATA 2212868 31 100.0 33 ............................... CTGTTAAAGCTAATTCAAATCGACGACCCAGTG 2212804 31 100.0 34 ............................... TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT 2212739 31 100.0 34 ............................... TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG 2212674 31 100.0 35 ............................... CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA 2212608 31 100.0 34 ............................... CATGAGCTGCCCAGCAATGCGGAACTGGATTATA 2212543 31 100.0 34 ............................... CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC 2212478 31 100.0 34 ............................... CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA 2212413 31 100.0 33 ............................... CTGCTACGGGCGACTTATCCGCTATGTACATCG 2212349 31 100.0 33 ............................... CATGGGATCCCATATCGAGGAGTTGGTCAAGCA 2212285 31 100.0 33 ............................... CTGTTAAAGCTGATTCAGATTGACGACCCAGTG 2212221 31 100.0 36 ............................... GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC 2212154 31 100.0 35 ............................... TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA 2212088 31 100.0 34 ............................... TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG 2212023 31 100.0 35 ............................... GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA 2211957 31 100.0 33 ............................... CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA 2211893 31 100.0 35 ............................... ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA 2211827 31 100.0 33 ............................... AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG 2211763 31 100.0 35 ............................... TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG 2211697 31 100.0 34 ............................... AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT 2211632 31 100.0 34 ............................... AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA 2211567 31 100.0 35 ............................... CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG 2211501 31 100.0 33 ............................... GGTGATGCGATGAAGGTTCAGTATCGCGATTCT 2211437 31 100.0 34 ............................... GCCGGACTGACCATTGTAAACGCCATCCAGAACA 2211372 31 100.0 36 ............................... CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG 2211305 31 100.0 35 ............................... GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT 2211239 31 100.0 33 ............................... ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA 2211175 31 100.0 35 ............................... CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA 2211109 31 100.0 34 ............................... TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA 2211044 31 100.0 35 ............................... ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG 2210978 31 100.0 35 ............................... CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA 2210912 31 100.0 36 ............................... CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC 2210845 31 100.0 34 ............................... AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT 2210780 31 100.0 36 ............................... GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG 2210713 31 100.0 34 ............................... TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG 2210648 31 100.0 35 ............................... CTACCACCACCTGGGACAAGGCAGGCGCCACCATC 2210582 31 100.0 33 ............................... GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC 2210518 31 100.0 34 ............................... TCATTATTCGACATTATGCGCCACCCCTCTGATG 2210453 31 100.0 35 ............................... CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC 2210387 31 100.0 35 ............................... TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT 2210321 31 100.0 35 ............................... TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA 2210255 31 100.0 34 ............................... CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT 2210190 31 100.0 35 ............................... CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG 2210124 31 100.0 35 ............................... CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC 2210058 31 100.0 35 ............................... GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC 2209992 31 100.0 34 ............................... CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG 2209927 31 100.0 35 ............................... CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG 2209861 31 100.0 33 ............................... TGGCGGCGAATAAAGAAGAGATTGTGGACATCA 2209797 31 100.0 34 ............................... CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG 2209732 31 100.0 34 ............................... TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC 2209667 31 100.0 36 ............................... AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA 2209600 31 100.0 34 ............................... ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC 2209535 31 100.0 34 ............................... ATGGTATAATATAGGCGTGAGGTGATAGCATGAA 2209470 31 100.0 34 ............................... TTGAAGAGAAACATCAACACCATCTTCCTGATGC 2209405 31 93.5 35 ..........T.T.................. TGAGAATTGTATACATTGAAAACATGGACGGCGAG 2209339 31 93.5 33 ..........T.T.................. TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA 2209275 31 93.5 35 ..........T.T.................. CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT 2209209 31 93.5 34 ..........T.T.................. GCAGTGAGCTACGACGAAAACCCGAGCTACATCG 2209144 31 90.3 34 ..........T.T.........A........ TCTGATACAGATCTGATTACTGCGTCCCAGCAAG 2209079 31 93.5 0 .....................AA........ | GA,C [2209059,2209070] ========== ====== ====== ====== =============================== ==================================== ================== 62 31 99.3 34 GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT # Left flank : CTTTTCCCCTATGTCCAGGCTCTGCTCCTGGCCAAATGGCTGAGAGAAGATCTGGATGGGTATCCGGCATTTTTGGGGAAGTGAAACAATGCTGATCCTGGTAACGTATGATGTAAATACCGAAACTCCGGCTGGAAGAGCCCGGCTGCGGAAAGTGGCCAAATGCTGTGTGGCCCACGGACAGAGAGTGCAGAATTCCGTATTCGAATGCCTGCTGGACCAGGCCCAGTTCGTCCTTCTGAAAGGAGAACTGGAGGCCCTCATCGACAAAGACCACGACAGCTTGCGGTTCTACAACCTGGGAAACACATATCAGAACAAAATCCAGCACCTGGGAGCCAAAAGGACCTATGACCCAGAAGCTCCCATGGTGCTGTAAGCGCGAAGGGGAAGCAAACAGAAGGAACAAGCACCGGAAAATGGGGCTTGGGAGATCCGTGAACTGACTTTCGCGAAAAAAGACGGAAGCGCTTGATGCACTCAAGCTGTCCCGTCTGACA # Right flank : TCGTATGGTAATCCGGCGGGGAGCCTTCGCAGGTGGATGGGTATAGACGCTTTTTGCCCTTCGGGTGGCCGGGATGGGTTTGCCTTCGGCGCCCCCTACGGCGTTGGTGTCGGAGGGACGGGGGATTAGGCGGGGCGCCGGGCCTGCGCCCCCTACAGTCTGTGCCGTTTCACAATGGGACGTGGATTGAAATTGTATACAAAAATCTGTTATAATAGCCTCATGCTTACAAGTTACTGGAACAAAGTGTATTCCAGTAGAAGAAACGAGGGGAAGTTATGGGAAGTATTGTATCGTTGACGGTGCTTTTTTGCATTTATGCGGTCAGTGAGCTGATCGCCATGCGCACCCGGGCCATCCTTTCTACGGTGCTGGGGATTTCGGTGATCCTTCTGGCGGGGTTCTGGTCGGGGATCCTGCCTCAGTCCATCATCAAGGATGCCCAGGTTTCGGGCATTGGCATGGGGGTGGTGGGGATGCTGATCGTCTCCATGGGGACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 2251085-2250927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085936.1 Acidaminococcus fermentans DSM 20731 strain FDAARGOS_1571 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 2251084 27 100.0 39 ........................... CGCCTCAGTAGCCTGCATGGTGGACAGGCTCTGGTTCGC 2251018 27 100.0 38 ........................... AGCCAGACCATCGCCCCGATTTTAGAGCAATACGGTCG 2250953 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 39 CCCCCGTATGGGGGCGTGGATTGAAAT # Left flank : TCCCAAAGTCCGCCCCGGGAGGGGCGGGGGACCATGCGCAGCATGGTGATGGGGGCATCGGCAACAGCCGATATTTTGCAGGCCCCCTGGACAACAGAAGAACATGGTCCAGCAGCCGGTACAATATCCAAACCGGACAATCTGACGTCTTTATCAACTGTCGCGATGAACGATATATCTTTAAACCAGGCGTTTTTTTACACCGGGAATATGGTATAGTAGAAGAAGTAGAAGAAGAAAATATCATCCTCTTCCGTTATCTATAGCTTTTCGACAACAGAGAACTTCCCCATATAGGGAGAATGGGAGACCATCATTATCGTTCTCGCGGGAGTCAAACAGACCTACAATCTGGAAGCTTCCATAATCCTGCAAGTGCGAGAGGGAAGCGAACAGAAAGAACAAGCATCTGGAAACGGGAACTGGAAAATCTGGAAACCGCCTTTCGCGGAAAAAGATGGAAGAACTTGAGAAACTCAAGCTGGCCCGTCTGACGTCGC # Right flank : TCGTATGGTAATCCGGCGGGGAGCCTTTGTGGGTGGATGGGTATAGGTTTCTTTGCCTTGACAGAACCCCCTACCCGCTGACGCGGGTCCTTTCCCCCTTTCAGGGGGACACAGGTAGGGACGGGCGTCTGGCGGGGCGCCGGGCCTGCGCCCCCTACGGCATCGCAATGGGTCAATGATGAAGGGTTTACCGAGAACCTGTTGATACAGACTTCCCCGCCCTTTTCCTTCATTTCCCCGGGTTTTTATGGTAAAATGAAAATTATATCCAAATACCCATTCTGTTGTGCAAAAGGAGCCTCTTTATGTTCCATACGGCCTTTTCGGAATCCGATCCCGATTCCTTCATCCATCATCACCTGAATTATTTCCTGCCCACCATCTATACCATCACCGACTGGGTGATGATCCTGCTGGCGGAATTCCTGGCGTACCACCTGCGGGGGGCTGTTACCGGGAACACCCATTTCCATATGCCCTGGCTGAACTTCTGGGTGGCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCGTATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //